From b5c803d3be2d66e84f6c776921404c8ff14f5493 Mon Sep 17 00:00:00 2001
From: nanguage <nanguage@yahoo.com>
Date: Tue, 9 Mar 2021 11:28:21 +0800
Subject: [PATCH] bump to 0.3.4

---
 coolbox/__init__.py         |  2 +-
 docker/Dockerfile           |  4 ++--
 docs/source/installation.md |  6 ++----
 environment.yml             |  1 -
 requirements.txt            | 14 +++++---------
 setup.py                    |  5 +++--
 6 files changed, 13 insertions(+), 19 deletions(-)

diff --git a/coolbox/__init__.py b/coolbox/__init__.py
index 80eb7f9..bfeb9e7 100755
--- a/coolbox/__init__.py
+++ b/coolbox/__init__.py
@@ -1 +1 @@
-__version__ = '0.3.3'
+__version__ = '0.3.4'
diff --git a/docker/Dockerfile b/docker/Dockerfile
index b172004..b6946d7 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -6,13 +6,13 @@ LABEL version="1"
 LABEL software="CoolBox"
 LABEL software.version="latest"
 LABEL website="https://github.com/Nanguage/CoolBox"
-LABEL documentation="https://github.com/Nanguage/CoolBox/wiki"
+LABEL documentation="https://gangcaolab.github.io/CoolBox/index.html"
 LABEL license="https://github.com/Nanguage/CoolBox/blob/master/LICENSE"
 LABEL tags="Bioinformatics,Genomics,Hi-C,Visualization"
 
 MAINTAINER nanguage@yahoo.com
 
-ENV version=0.2.1
+ENV version=0.3.4
 
 ENV MINICONDA https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
 
diff --git a/docs/source/installation.md b/docs/source/installation.md
index d3caadc..2937856 100644
--- a/docs/source/installation.md
+++ b/docs/source/installation.md
@@ -18,7 +18,7 @@ $ git clone https://github.com/GangCaoLab/CoolBox.git
 $ cd CoolBox
 $ conda env create --file environment.yml
 $ conda activate coolbox
-$ python -m pip install . -vv
+$ python setup.py install
 ```
 
 Enable `ipywidgets` to use the browser in Jupyter notebook:
@@ -42,11 +42,9 @@ interactively explore their genomic data.
 
 For this purpose, you can reference this
 [Quickstart (API) page](https://gangcaolab.github.io/CoolBox/quick_start_API.html).
-
-
 Or just import `coolbox` as a
 Python plot package use in their own plot
-script(see [example](https://todo)).
+script.
 
 
 ### CLI
diff --git a/environment.yml b/environment.yml
index 690219c..2309655 100644
--- a/environment.yml
+++ b/environment.yml
@@ -11,4 +11,3 @@ dependencies:
   - pairix
   - tabix
   - samtools>=1.10
-  - libcurl
diff --git a/requirements.txt b/requirements.txt
index 69cb17e..2063c9e 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -1,22 +1,18 @@
-scipy
+scipy>=1.0.0
 numpy
 pandas
 statsmodels
-matplotlib
-jupyter
-ipywidgets
+matplotlib>=3.1.1
+jupyter>=1.0.0
+ipywidgets>=7.5.1
 nbformat
 voila
 svgutils
-
 intervaltree
 dna_features_viewer
-
 h5py
 cooler
 pybbi
-
 numpydoc
 fire
-
-pytest
\ No newline at end of file
+pytest
diff --git a/setup.py b/setup.py
index d3ac22a..f9b27ef 100644
--- a/setup.py
+++ b/setup.py
@@ -7,8 +7,9 @@
     "Operating System :: POSIX",
     "Programming Language :: Python",
     "Programming Language :: Python :: 3",
-    "Programming Language :: Python :: 3.6",
     "Programming Language :: Python :: 3.7",
+    "Programming Language :: Python :: 3.8",
+    "Programming Language :: Python :: 3.9",
     "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
     "Intended Audience :: Science/Research",
     "Topic :: Scientific/Engineering :: Bio-Informatics",
@@ -62,5 +63,5 @@ def get_install_requires():
     zip_safe=False,
     classifiers=classifiers,
     install_requires=get_install_requires(),
-    python_requires='>=3.6, <4',
+    python_requires='>=3.7, <4',
 )