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JBrowse 1 migration script #1106

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cmdcolin opened this issue Aug 4, 2020 · 3 comments
Closed

JBrowse 1 migration script #1106

cmdcolin opened this issue Aug 4, 2020 · 3 comments
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enhancement New feature or request

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@cmdcolin
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cmdcolin commented Aug 4, 2020

A common request has been how to migrate a jbrowse 1 instance over.

We might need to design the workflow for this, but we are thinking a CLI script might help

Point the CLI at a jbrowse instance or trackList.json, and load into a config.json

Doesn't need to be perfect, things like callbacks and stuff might not work so just a conservative translation

note: from pairing with Rob

@cmdcolin cmdcolin added the enhancement New feature or request label Aug 4, 2020
@cmdcolin
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cmdcolin commented Aug 4, 2020

The alternative is using the connection script, but we were thinking that the full conversion to jbrowse 2 format would be better for users that are seriously investing in jbrowse 2

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i am not sure we will ever make an 'official' tool for this. there are some hacky scripts that go halfway

here is one example https://gist.github.com/cmdcolin/2ef875fc19c5f164aad41bd330f1bb37 (from discussion thread here #3927)

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could add to docs potentially #3584

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