diff --git a/.integrated_tests.yaml b/.integrated_tests.yaml index 3fa9cbb2698..8da0056af21 100644 --- a/.integrated_tests.yaml +++ b/.integrated_tests.yaml @@ -1,6 +1,6 @@ baselines: bucket: geosx - baseline: integratedTests/baseline_integratedTests-pr3300-7077-1277f18 + baseline: integratedTests/baseline_integratedTests-pr3135-7235-53174a0 allow_fail: all: '' diff --git a/BASELINE_NOTES.md b/BASELINE_NOTES.md index 13eca60093d..48b90a0e986 100644 --- a/BASELINE_NOTES.md +++ b/BASELINE_NOTES.md @@ -6,10 +6,16 @@ This file is designed to track changes to the integrated test baselines. Any developer who updates the baseline ID in the .integrated_tests.yaml file is expected to create an entry in this file with the pull request number, date, and their justification for rebaselining. These notes should be in reverse-chronological order, and use the following time format: (YYYY-MM-DD). +PR #3135 (2024-09-04) +====================== +Temperature dependent single phase thermal conductivity. Rebaseline all thermal cases. + + PR #3294 (2024-09-01) ====================== Re-enable enforcement of wave propagation integrated test pass. + PR #3300 (2024-08-28) ====================== Re-enable floating point exceptions. Rebaseline due to minor changing default value of maxRelativeCompDensChange from 1.7976931348623157e+308 to 1.7976931348623157e+208. diff --git a/inputFiles/singlePhaseFlow/3D_10x10x10_thermalCompressible_base.xml b/inputFiles/singlePhaseFlow/3D_10x10x10_thermalCompressible_base.xml index 942ab9d95c8..6de1ae4dfdf 100644 --- a/inputFiles/singlePhaseFlow/3D_10x10x10_thermalCompressible_base.xml +++ b/inputFiles/singlePhaseFlow/3D_10x10x10_thermalCompressible_base.xml @@ -83,9 +83,9 @@ specificHeatCapacity="4.0e3" referenceInternalEnergy="1.1e6"/> - + defaultThermalConductivityComponents="{ 3.5, 3.5, 3.5 }"/> diff --git a/inputFiles/singlePhaseFlow/thermalCompressible_2d_base.xml b/inputFiles/singlePhaseFlow/thermalCompressible_2d_base.xml index 767e0f4f701..f51963bf385 100644 --- a/inputFiles/singlePhaseFlow/thermalCompressible_2d_base.xml +++ b/inputFiles/singlePhaseFlow/thermalCompressible_2d_base.xml @@ -11,7 +11,7 @@ targetRegions="{ region }"> + newtonMaxIter="100"/> @@ -34,7 +34,7 @@ solidInternalEnergyModelName="rockInternalEnergy_linear"/> - + - + - - - + + + + + + + @@ -125,21 +135,21 @@ setNames="{ all }" objectPath="ElementRegions/region/cb" fieldName="temperature" - scale="0"/> + scale="100"/> + scale="100"/> + scale="-20.0"/> diff --git a/inputFiles/singlePhaseFlow/thermalCompressible_2d_benchmark.xml b/inputFiles/singlePhaseFlow/thermalCompressible_2d_benchmark.xml index 68e33c33f50..b578a7ac119 100644 --- a/inputFiles/singlePhaseFlow/thermalCompressible_2d_benchmark.xml +++ b/inputFiles/singlePhaseFlow/thermalCompressible_2d_benchmark.xml @@ -9,7 +9,7 @@ + materialList="{ fluid, rock_linear, thermalCond_linear }"/> diff --git a/inputFiles/singlePhaseFlow/thermalCompressible_2d_smoke.xml b/inputFiles/singlePhaseFlow/thermalCompressible_2d_smoke.xml index 5fea4f7ebaa..e4ec4ed0475 100644 --- a/inputFiles/singlePhaseFlow/thermalCompressible_2d_smoke.xml +++ b/inputFiles/singlePhaseFlow/thermalCompressible_2d_smoke.xml @@ -9,7 +9,7 @@ + materialList="{ fluid, rock_linear, thermalCond_linear }"/> diff --git a/inputFiles/singlePhaseFlow/thermalCompressible_nonLinear_2d_benchmark.xml b/inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentSinglePhaseThermalConductivity_benchmark.xml similarity index 93% rename from inputFiles/singlePhaseFlow/thermalCompressible_nonLinear_2d_benchmark.xml rename to inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentSinglePhaseThermalConductivity_benchmark.xml index 47c273a3519..a526d78f438 100644 --- a/inputFiles/singlePhaseFlow/thermalCompressible_nonLinear_2d_benchmark.xml +++ b/inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentSinglePhaseThermalConductivity_benchmark.xml @@ -9,7 +9,7 @@ + materialList="{ fluid, rock_linear, thermalCond_nonLinear }"/> diff --git a/inputFiles/singlePhaseFlow/thermalCompressible_nonLinear_2d_smoke.xml b/inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentSinglePhaseThermalConductivity_smoke.xml similarity index 93% rename from inputFiles/singlePhaseFlow/thermalCompressible_nonLinear_2d_smoke.xml rename to inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentSinglePhaseThermalConductivity_smoke.xml index e4cfc03c23b..ca969a98c99 100644 --- a/inputFiles/singlePhaseFlow/thermalCompressible_nonLinear_2d_smoke.xml +++ b/inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentSinglePhaseThermalConductivity_smoke.xml @@ -9,7 +9,7 @@ + materialList="{ fluid, rock_linear, thermalCond_nonLinear }"/> diff --git a/inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentVolumetricHeatCapacity_benchmark.xml b/inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentVolumetricHeatCapacity_benchmark.xml new file mode 100644 index 00000000000..fa9af06fd2f --- /dev/null +++ b/inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentVolumetricHeatCapacity_benchmark.xml @@ -0,0 +1,50 @@ + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentVolumetricHeatCapacity_smoke.xml b/inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentVolumetricHeatCapacity_smoke.xml new file mode 100644 index 00000000000..013e81c76c2 --- /dev/null +++ b/inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentVolumetricHeatCapacity_smoke.xml @@ -0,0 +1,50 @@ + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/inputFiles/singlePhaseFlow/thermalSinglePhaseFlow.ats b/inputFiles/singlePhaseFlow/thermalSinglePhaseFlow.ats index cd021117e0a..886d8add60a 100644 --- a/inputFiles/singlePhaseFlow/thermalSinglePhaseFlow.ats +++ b/inputFiles/singlePhaseFlow/thermalSinglePhaseFlow.ats @@ -22,9 +22,17 @@ decks = [ check_step=20, restartcheck_params=RestartcheckParameters(**restartcheck_params)), TestDeck( - name="thermalCompressible_nonLinear_2d_smoke", + name="thermalCompressible_temperatureDependentVolumetricHeatCapacity_smoke", description= - 'non-linear thermal diffusion around a wellbore)', + 'a wellbore problem with temperature dependent volumetric heat capacity)', + partitions=((1, 1, 1), (2, 2, 1)), + restart_step=1, + check_step=2, + restartcheck_params=RestartcheckParameters(**restartcheck_params)), + TestDeck( + name="thermalCompressible_temperatureDependentSinglePhaseThermalConductivity_smoke", + description= + 'a wellbore problem with temperature dependent thermal conductivity)', partitions=((1, 1, 1), (2, 2, 1)), restart_step=1, check_step=2, diff --git a/inputFiles/thermalSinglePhaseFlowFractures/egsCollab_thermalFlow/egsCollab_thermalFlow_base.xml b/inputFiles/thermalSinglePhaseFlowFractures/egsCollab_thermalFlow/egsCollab_thermalFlow_base.xml index c83229e78b5..4f238dee779 100644 --- a/inputFiles/thermalSinglePhaseFlowFractures/egsCollab_thermalFlow/egsCollab_thermalFlow_base.xml +++ b/inputFiles/thermalSinglePhaseFlowFractures/egsCollab_thermalFlow/egsCollab_thermalFlow_base.xml @@ -60,9 +60,9 @@ specificHeatCapacity="4.2e6" referenceInternalEnergy="0.99"/> - + defaultThermalConductivityComponents="{ 3.81, 3.81, 3.81 }"/> - + defaultThermalConductivityComponents="{ 1, 1, 1 }"/> - + defaultThermalConductivityComponents="{ 836, 836, 836 }"/> diff --git a/inputFiles/thermoPoromechanicsFractures/ThermoPoroElastic_base.xml b/inputFiles/thermoPoromechanicsFractures/ThermoPoroElastic_base.xml index 1ba0e49f27f..fc20919e014 100644 --- a/inputFiles/thermoPoromechanicsFractures/ThermoPoroElastic_base.xml +++ b/inputFiles/thermoPoromechanicsFractures/ThermoPoroElastic_base.xml @@ -31,9 +31,9 @@ specificHeatCapacity="1.672e2" referenceInternalEnergy="0.001"/> - + defaultThermalConductivityComponents="{ 1, 1, 1 }"/> - + defaultThermalConductivityComponents="{ 10, 10, 10 }"/> - + defaultThermalConductivityComponents="{ 15, 15, 15 }"/> - + defaultThermalConductivityComponents="{ 1.0, 1.0, 1.0 }"/> - + defaultThermalConductivityComponents="{ 1.66, 1.66, 1.66 }"/> - + defaultThermalConductivityComponents="{ 1.0, 1.0, 1.0 }"/> diff --git a/inputFiles/wellbore/CasedThermoElasticWellbore_base.xml b/inputFiles/wellbore/CasedThermoElasticWellbore_base.xml index 87e49a84312..a161b4c85fa 100644 --- a/inputFiles/wellbore/CasedThermoElasticWellbore_base.xml +++ b/inputFiles/wellbore/CasedThermoElasticWellbore_base.xml @@ -142,17 +142,17 @@ - + defaultThermalConductivityComponents="{ 15, 15, 15 }"/> - + defaultThermalConductivityComponents="{ 1.0, 1.0, 1.0 }"/> - + defaultThermalConductivityComponents="{ 1.66, 1.66, 1.66 }"/> diff --git a/inputFiles/wellbore/ThermoPoroElasticWellbore_base.xml b/inputFiles/wellbore/ThermoPoroElasticWellbore_base.xml index 20aaa9ae436..cc8b31618ab 100644 --- a/inputFiles/wellbore/ThermoPoroElasticWellbore_base.xml +++ b/inputFiles/wellbore/ThermoPoroElasticWellbore_base.xml @@ -85,9 +85,9 @@ - + defaultThermalConductivityComponents="{ 6.6, 6.6, 6.6 }"/> diff --git a/src/coreComponents/constitutive/CMakeLists.txt b/src/coreComponents/constitutive/CMakeLists.txt index 3a01edc6e7c..69a953f361a 100644 --- a/src/coreComponents/constitutive/CMakeLists.txt +++ b/src/coreComponents/constitutive/CMakeLists.txt @@ -169,7 +169,7 @@ set( constitutive_headers thermalConductivity/MultiPhaseThermalConductivityFields.hpp thermalConductivity/MultiPhaseThermalConductivitySelector.hpp thermalConductivity/MultiPhaseVolumeWeightedThermalConductivity.hpp - thermalConductivity/SinglePhaseConstantThermalConductivity.hpp + thermalConductivity/SinglePhaseThermalConductivity.hpp thermalConductivity/SinglePhaseThermalConductivityBase.hpp thermalConductivity/SinglePhaseThermalConductivityFields.hpp thermalConductivity/SinglePhaseThermalConductivitySelector.hpp @@ -285,7 +285,7 @@ set( constitutive_sources thermalConductivity/MultiPhaseConstantThermalConductivity.cpp thermalConductivity/MultiPhaseThermalConductivityBase.cpp thermalConductivity/MultiPhaseVolumeWeightedThermalConductivity.cpp - thermalConductivity/SinglePhaseConstantThermalConductivity.cpp + thermalConductivity/SinglePhaseThermalConductivity.cpp thermalConductivity/SinglePhaseThermalConductivityBase.cpp ) diff --git a/src/coreComponents/constitutive/docs/Constitutive.rst b/src/coreComponents/constitutive/docs/Constitutive.rst index 68279ea3774..61108c5525d 100644 --- a/src/coreComponents/constitutive/docs/Constitutive.rst +++ b/src/coreComponents/constitutive/docs/Constitutive.rst @@ -19,6 +19,7 @@ These models are grouped together based on their input/output interface. PermeabilityModels PorousSolids TemperatureDependentSolidVolumetricHeatCapacity + TemperatureDependentThermalConductivity In an input XML file, constitutive models are listed in the ```` block. diff --git a/src/coreComponents/constitutive/docs/TemperatureDependentThermalConductivity.rst b/src/coreComponents/constitutive/docs/TemperatureDependentThermalConductivity.rst new file mode 100644 index 00000000000..cfe9fe25264 --- /dev/null +++ b/src/coreComponents/constitutive/docs/TemperatureDependentThermalConductivity.rst @@ -0,0 +1,53 @@ +.. _TemperatureDependentThermalConductivity: + + +########################################################## +Temperature-dependent Thermal Conductivity Model +########################################################## + + +Overview +====================== + +In this model, thermal conductivity of porous medium is defined as a linear function of temperature: + +.. math:: + k = k_{0} + \frac{ dk }{ dT } (T - T_{0}) + +where + :math:`k` is the thermal conductivity at temperature T, which is a vector; + :math:`k_{0}` is the reference thermal conductivity at the reference temperature; + :math:`T_{0}` is the reference temperature; + :math:`\frac{ dk }{ dT }` is the gradient of the thermal conductivity with respect to temperature, which equals to zero for the cases with constant thermal conductivity; note that this term is also in vector form, whose components could vary with directions. + + + +Parameters +====================== + +The temperature-dependent thermal conductivity model is called in the +```` block of the input XML file. +This model must be assigned a unique name via the +``name`` attribute. +This name is used to attach the model to CellElementRegion of the physical +domain in the ```` block. + +The following attributes are supported: + +.. include:: /coreComponents/schema/docs/SinglePhaseThermalConductivity.rst + + +Example +======================= + +.. code-block:: xml + + + ... + + ... + diff --git a/src/coreComponents/constitutive/docs/constitutiveDeveloperGuide.rst b/src/coreComponents/constitutive/docs/constitutiveDeveloperGuide.rst index 224903eabfc..8f1b7292122 100644 --- a/src/coreComponents/constitutive/docs/constitutiveDeveloperGuide.rst +++ b/src/coreComponents/constitutive/docs/constitutiveDeveloperGuide.rst @@ -88,7 +88,7 @@ dependency of porosity and permeability on the primary unknowns. The base class ``CoupledSolidBase`` implements some basic behaviors and is used to access a generic ``CoupledSolid`` in a physics solver: -.. literalinclude:: /coreComponents/physicsSolvers/fluidFlow/SinglePhaseBase.cpp +.. literalinclude:: /coreComponents/physicsSolvers/fluidFlow/SinglePhaseBase.hpp :language: c++ :start-after: //START_SPHINX_INCLUDE_COUPLEDSOLID :end-before: //END_SPHINX_INCLUDE_COUPLEDSOLID diff --git a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseConstantThermalConductivity.cpp b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseConstantThermalConductivity.cpp deleted file mode 100644 index 96398d60a59..00000000000 --- a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseConstantThermalConductivity.cpp +++ /dev/null @@ -1,101 +0,0 @@ -/* - * ------------------------------------------------------------------------------------------------------------ - * SPDX-License-Identifier: LGPL-2.1-only - * - * Copyright (c) 2016-2024 Lawrence Livermore National Security LLC - * Copyright (c) 2018-2024 Total, S.A - * Copyright (c) 2018-2024 The Board of Trustees of the Leland Stanford Junior University - * Copyright (c) 2023-2024 Chevron - * Copyright (c) 2019- GEOS/GEOSX Contributors - * All rights reserved - * - * See top level LICENSE, COPYRIGHT, CONTRIBUTORS, NOTICE, and ACKNOWLEDGEMENTS files for details. - * ------------------------------------------------------------------------------------------------------------ - */ - -/** - * @file SinglePhaseConstantThermalConductivity.cpp - */ - -#include "SinglePhaseConstantThermalConductivity.hpp" - -namespace geos -{ - -using namespace dataRepository; - -namespace constitutive -{ - -SinglePhaseConstantThermalConductivity::SinglePhaseConstantThermalConductivity( string const & name, Group * const parent ): - SinglePhaseThermalConductivityBase( name, parent ) -{ - registerWrapper( viewKeyStruct::thermalConductivityComponentsString(), &m_thermalConductivityComponents ). - setInputFlag( InputFlags::REQUIRED ). - setRestartFlags( RestartFlags::NO_WRITE ). - setDescription( "xx, yy, and zz components of a diagonal thermal conductivity tensor [J/(s.m.K)]" ); -} - -std::unique_ptr< ConstitutiveBase > -SinglePhaseConstantThermalConductivity::deliverClone( string const & name, - Group * const parent ) const -{ - return SinglePhaseThermalConductivityBase::deliverClone( name, parent ); -} - -void SinglePhaseConstantThermalConductivity::initializeRockFluidState( arrayView2d< real64 const > const & initialPorosity ) const -{ - for( localIndex ei = 0; ei < initialPorosity.size( 0 ); ++ei ) - { - // NOTE: enforcing 1 quadrature point - for( localIndex q = 0; q < 1; ++q ) - { - m_effectiveConductivity[ei][q][0] = m_thermalConductivityComponents[0]; - m_effectiveConductivity[ei][q][1] = m_thermalConductivityComponents[1]; - m_effectiveConductivity[ei][q][2] = m_thermalConductivityComponents[2]; - } - } -} - -void SinglePhaseConstantThermalConductivity::update( arrayView2d< real64 const > const & initialPorosity ) const -{ - real64 thermalConductivityComponents[3]; - for( int i = 0; i<3; ++i ) - { - thermalConductivityComponents[i] = m_thermalConductivityComponents[i]; - } - arrayView3d< real64 > const effectiveConductivity = m_effectiveConductivity; - - forAll< parallelDevicePolicy<> >( initialPorosity.size( 0 ), [=] GEOS_HOST_DEVICE ( localIndex const ei ) - { - // NOTE: enforcing 1 quadrature point - for( localIndex q = 0; q < 1; ++q ) - { - effectiveConductivity[ei][q][0] = thermalConductivityComponents[0]; - effectiveConductivity[ei][q][1] = thermalConductivityComponents[1]; - effectiveConductivity[ei][q][2] = thermalConductivityComponents[2]; - } - } ); -} - -void SinglePhaseConstantThermalConductivity::allocateConstitutiveData( dataRepository::Group & parent, - localIndex const numConstitutivePointsPerParentIndex ) -{ - SinglePhaseThermalConductivityBase::allocateConstitutiveData( parent, numConstitutivePointsPerParentIndex ); -} - -void SinglePhaseConstantThermalConductivity::postInputInitialization() -{ - GEOS_THROW_IF( m_thermalConductivityComponents[0] <= 0 || - m_thermalConductivityComponents[1] <= 0 || - m_thermalConductivityComponents[2] <= 0, - GEOS_FMT( "{}: the components of the thermal conductivity tensor must be strictly positive", - getFullName() ), - InputError ); -} - -REGISTER_CATALOG_ENTRY( ConstitutiveBase, SinglePhaseConstantThermalConductivity, string const &, Group * const ) - -} // namespace constitutive - -} // namespace geos diff --git a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivity.cpp b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivity.cpp new file mode 100644 index 00000000000..aad8dcb5187 --- /dev/null +++ b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivity.cpp @@ -0,0 +1,134 @@ +/* + * ------------------------------------------------------------------------------------------------------------ + * SPDX-License-Identifier: LGPL-2.1-only + * + * Copyright (c) 2016-2024 Lawrence Livermore National Security LLC + * Copyright (c) 2018-2024 Total, S.A + * Copyright (c) 2018-2024 The Board of Trustees of the Leland Stanford Junior University + * Copyright (c) 2023-2024 Chevron + * Copyright (c) 2019- GEOS/GEOSX Contributors + * All rights reserved + * + * See top level LICENSE, COPYRIGHT, CONTRIBUTORS, NOTICE, and ACKNOWLEDGEMENTS files for details. + * ------------------------------------------------------------------------------------------------------------ + */ + +/** + * @file SinglePhaseThermalConductivity.cpp + */ + +#include "SinglePhaseThermalConductivity.hpp" + +namespace geos +{ + +using namespace dataRepository; + +namespace constitutive +{ + +SinglePhaseThermalConductivity::SinglePhaseThermalConductivity( string const & name, Group * const parent ): + SinglePhaseThermalConductivityBase( name, parent ) +{ + registerWrapper( viewKeyStruct::defaultThermalConductivityComponentsString(), &m_defaultThermalConductivityComponents ). + setInputFlag( InputFlags::REQUIRED ). + setRestartFlags( RestartFlags::NO_WRITE ). + setDescription( "xx, yy, and zz diagonal components of the default thermal conductivity tensor [J/(s.m.K)]" ); + + registerWrapper( viewKeyStruct::thermalConductivityGradientComponentsString(), &m_thermalConductivityGradientComponents ). + setInputFlag( InputFlags::OPTIONAL ). + setApplyDefaultValue( {0.0, 0.0, 0.0} ). + setDescription( "xx, yy, and zz diagonal components of the thermal conductivity gradient tensor w.r.t. temperature [J/(s.m.K^2)]" ); + + registerWrapper( viewKeyStruct::referenceTemperatureString(), &m_referenceTemperature ). + setInputFlag( InputFlags::OPTIONAL ). + setApplyDefaultValue( 0.0 ). + setDescription( "The reference temperature at which the conductivity components are equal to the default values" ); +} + +std::unique_ptr< ConstitutiveBase > +SinglePhaseThermalConductivity::deliverClone( string const & name, + Group * const parent ) const +{ + return SinglePhaseThermalConductivityBase::deliverClone( name, parent ); +} + +void SinglePhaseThermalConductivity::initializeRockFluidState( arrayView2d< real64 const > const & initialPorosity ) const +{ + arrayView3d< real64 > dEffectiveConductivity_dT = m_dEffectiveConductivity_dT.toView(); + arrayView3d< real64 > effectiveConductivity = m_effectiveConductivity.toView(); + R1Tensor const defaultThermalConductivityComponents = m_defaultThermalConductivityComponents; + R1Tensor const thermalConductivityGradientComponents = m_thermalConductivityGradientComponents; + + forAll< parallelDevicePolicy<> >( initialPorosity.size( 0 ), [=] GEOS_HOST_DEVICE ( localIndex const ei ) + { + // NOTE: enforcing 1 quadrature point + for( localIndex q = 0; q < 1; ++q ) + { + effectiveConductivity[ei][q][0] = defaultThermalConductivityComponents[0]; + effectiveConductivity[ei][q][1] = defaultThermalConductivityComponents[1]; + effectiveConductivity[ei][q][2] = defaultThermalConductivityComponents[2]; + + dEffectiveConductivity_dT[ei][q][0] = thermalConductivityGradientComponents[0]; + dEffectiveConductivity_dT[ei][q][1] = thermalConductivityGradientComponents[1]; + dEffectiveConductivity_dT[ei][q][2] = thermalConductivityGradientComponents[2]; + } + } ); +} + +void SinglePhaseThermalConductivity::updateFromTemperature( arrayView1d< real64 const > const & temperature ) const +{ + arrayView3d< real64 > dEffectiveConductivity_dT = m_dEffectiveConductivity_dT.toView(); + arrayView3d< real64 > effectiveConductivity = m_effectiveConductivity.toView(); + R1Tensor const defaultThermalConductivityComponents = m_defaultThermalConductivityComponents; + R1Tensor const thermalConductivityGradientComponents = m_thermalConductivityGradientComponents; + real64 const referenceTemperature = m_referenceTemperature; + + forAll< parallelDevicePolicy<> >( temperature.size( 0 ), [=] GEOS_HOST_DEVICE ( localIndex const ei ) + { + for( localIndex q = 0; q < 1; ++q ) + { + + real64 const deltaTemperature = temperature[ei] - referenceTemperature; + + effectiveConductivity[ei][q][0] = defaultThermalConductivityComponents[0] + thermalConductivityGradientComponents[0] * deltaTemperature; + effectiveConductivity[ei][q][1] = defaultThermalConductivityComponents[1] + thermalConductivityGradientComponents[1] * deltaTemperature; + effectiveConductivity[ei][q][2] = defaultThermalConductivityComponents[2] + thermalConductivityGradientComponents[2] * deltaTemperature; + + for( localIndex i=0; i<=2; i++ ) + { + if( effectiveConductivity[ei][q][i] <1e-2 ) + { + effectiveConductivity[ei][q][i] = 1e-2; // W/m/K To avoid negative conductivity + } + } + + dEffectiveConductivity_dT[ei][q][0] = thermalConductivityGradientComponents[0]; + dEffectiveConductivity_dT[ei][q][1] = thermalConductivityGradientComponents[1]; + dEffectiveConductivity_dT[ei][q][2] = thermalConductivityGradientComponents[2]; + } + } ); +} + +void SinglePhaseThermalConductivity::allocateConstitutiveData( dataRepository::Group & parent, + localIndex const numConstitutivePointsPerParentIndex ) +{ + SinglePhaseThermalConductivityBase::allocateConstitutiveData( parent, numConstitutivePointsPerParentIndex ); +} + +void SinglePhaseThermalConductivity::postInputInitialization() +{ + GEOS_THROW_IF( m_defaultThermalConductivityComponents[0] <= 0 || + m_defaultThermalConductivityComponents[1] <= 0 || + m_defaultThermalConductivityComponents[2] <= 0, + GEOS_FMT( "{}: the components of the default thermal conductivity tensor must be strictly positive", + getFullName() ), + InputError ); + +} + +REGISTER_CATALOG_ENTRY( ConstitutiveBase, SinglePhaseThermalConductivity, string const &, Group * const ) + +} // namespace constitutive + +} // namespace geos diff --git a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseConstantThermalConductivity.hpp b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivity.hpp similarity index 61% rename from src/coreComponents/constitutive/thermalConductivity/SinglePhaseConstantThermalConductivity.hpp rename to src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivity.hpp index 7e069bd0bd2..fa6d7623ef8 100644 --- a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseConstantThermalConductivity.hpp +++ b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivity.hpp @@ -14,11 +14,11 @@ */ /** - * @file SinglePhaseConstantThermalConductivity.hpp + * @file SinglePhaseThermalConductivity.hpp */ -#ifndef GEOS_CONSTITUTIVE_SINGLEPHASE_THERMALCONDUCTIVITY_CONSTANTTHERMALCONDUCTIVITY_HPP_ -#define GEOS_CONSTITUTIVE_SINGLEPHASE_THERMALCONDUCTIVITY_CONSTANTTHERMALCONDUCTIVITY_HPP_ +#ifndef GEOS_CONSTITUTIVE_SINGLEPHASE_THERMALCONDUCTIVITY_THERMALCONDUCTIVITY_HPP_ +#define GEOS_CONSTITUTIVE_SINGLEPHASE_THERMALCONDUCTIVITY_THERMALCONDUCTIVITY_HPP_ #include "constitutive/thermalConductivity/SinglePhaseThermalConductivityBase.hpp" @@ -31,7 +31,7 @@ namespace constitutive /** * @brief The update class for constant thermal conductivity (does not do anything) */ -class SinglePhaseConstantThermalConductivityUpdate : public SinglePhaseThermalConductivityBaseUpdate +class SinglePhaseThermalConductivityUpdate : public SinglePhaseThermalConductivityBaseUpdate { public: @@ -40,8 +40,10 @@ class SinglePhaseConstantThermalConductivityUpdate : public SinglePhaseThermalCo * @param effectiveConductivity the array of cell-wise effective conductivities in the subregion * the subregion */ - SinglePhaseConstantThermalConductivityUpdate( arrayView3d< real64 > const & effectiveConductivity ) - : SinglePhaseThermalConductivityBaseUpdate( effectiveConductivity ) + SinglePhaseThermalConductivityUpdate( arrayView3d< real64 > const & effectiveConductivity, + arrayView3d< real64 > const & dEffectiveConductivity_dT ) + : SinglePhaseThermalConductivityBaseUpdate( effectiveConductivity, + dEffectiveConductivity_dT ) {} GEOS_HOST_DEVICE @@ -55,7 +57,7 @@ class SinglePhaseConstantThermalConductivityUpdate : public SinglePhaseThermalCo /** * @brief The class for constant thermal conductivity */ -class SinglePhaseConstantThermalConductivity : public SinglePhaseThermalConductivityBase +class SinglePhaseThermalConductivity : public SinglePhaseThermalConductivityBase { public: @@ -64,7 +66,7 @@ class SinglePhaseConstantThermalConductivity : public SinglePhaseThermalConducti * @param[in] name the name of the class * @param[in] parent pointer to the parent Group */ - SinglePhaseConstantThermalConductivity( string const & name, Group * const parent ); + SinglePhaseThermalConductivity( string const & name, Group * const parent ); std::unique_ptr< ConstitutiveBase > deliverClone( string const & name, Group * const parent ) const override; @@ -72,18 +74,16 @@ class SinglePhaseConstantThermalConductivity : public SinglePhaseThermalConducti virtual void allocateConstitutiveData( dataRepository::Group & parent, localIndex const numConstitutivePointsPerParentIndex ) override; - static string catalogName() { return "SinglePhaseConstantThermalConductivity"; } + static string catalogName() { return "SinglePhaseThermalConductivity"; } virtual string getCatalogName() const override { return catalogName(); } - virtual void initializeRockFluidState( arrayView2d< real64 const > const & initialPorosity ) const override final; - virtual void update( arrayView2d< real64 const > const & porosity ) const override final; - + virtual void updateFromTemperature( arrayView1d< real64 const > const & temperature ) const override final; /// Type of kernel wrapper for in-kernel update - using KernelWrapper = SinglePhaseConstantThermalConductivityUpdate; + using KernelWrapper = SinglePhaseThermalConductivityUpdate; /** * @brief Create an update kernel wrapper. @@ -91,12 +91,15 @@ class SinglePhaseConstantThermalConductivity : public SinglePhaseThermalConducti */ KernelWrapper createKernelWrapper() const { - return KernelWrapper( m_effectiveConductivity ); + return KernelWrapper( m_effectiveConductivity, + m_dEffectiveConductivity_dT ); } struct viewKeyStruct : public SinglePhaseThermalConductivityBase::viewKeyStruct { - static constexpr char const * thermalConductivityComponentsString() { return "thermalConductivityComponents"; } + static constexpr char const * defaultThermalConductivityComponentsString() { return "defaultThermalConductivityComponents"; } + static constexpr char const * thermalConductivityGradientComponentsString() { return "thermalConductivityGradientComponents"; } + static constexpr char const * referenceTemperatureString() { return "referenceTemperature"; } } viewKeys; protected: @@ -105,8 +108,14 @@ class SinglePhaseConstantThermalConductivity : public SinglePhaseThermalConducti private: - /// default thermal conductivity in the subRegion - R1Tensor m_thermalConductivityComponents; + /// Default thermal conductivity components in the subRegion + R1Tensor m_defaultThermalConductivityComponents; + + /// Thermal conductivity gradient components in the subRegion + R1Tensor m_thermalConductivityGradientComponents; + + /// Reference temperature + real64 m_referenceTemperature; }; diff --git a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivityBase.cpp b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivityBase.cpp index 245cf2800d5..d4760a4d871 100644 --- a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivityBase.cpp +++ b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivityBase.cpp @@ -33,6 +33,7 @@ SinglePhaseThermalConductivityBase::SinglePhaseThermalConductivityBase( string c : ConstitutiveBase( name, parent ) { registerField( fields::thermalconductivity::effectiveConductivity{}, &m_effectiveConductivity ); + registerField( fields::thermalconductivity::dEffectiveConductivity_dT{}, &m_dEffectiveConductivity_dT ); } void SinglePhaseThermalConductivityBase::postInputInitialization() @@ -40,6 +41,7 @@ void SinglePhaseThermalConductivityBase::postInputInitialization() ConstitutiveBase::postInputInitialization(); m_effectiveConductivity.resize( 0, 0, 3 ); + m_dEffectiveConductivity_dT.resize( 0, 0, 3 ); } void SinglePhaseThermalConductivityBase::allocateConstitutiveData( dataRepository::Group & parent, @@ -47,6 +49,7 @@ void SinglePhaseThermalConductivityBase::allocateConstitutiveData( dataRepositor { // NOTE: enforcing 1 quadrature point m_effectiveConductivity.resize( 0, 1, 3 ); + m_dEffectiveConductivity_dT.resize( 0, 1, 3 ); ConstitutiveBase::allocateConstitutiveData( parent, numConstitutivePointsPerParentIndex ); } diff --git a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivityBase.hpp b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivityBase.hpp index 16bdf302ec0..c0037f04751 100644 --- a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivityBase.hpp +++ b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivityBase.hpp @@ -56,16 +56,18 @@ class SinglePhaseThermalConductivityBaseUpdate /** * @brief Constructor for the class performing the thermal conductivity updates * @param effectiveConductivity the array of cell-wise effective conductivities in the subregion - * @param dEffectiveConductivity_dPhaseVolFrac the array of cell-wise derivatives of effective conductivities wrt phase vol fractions in - * the subregion */ - SinglePhaseThermalConductivityBaseUpdate( arrayView3d< real64 > const & effectiveConductivity ) - : m_effectiveConductivity( effectiveConductivity ) + SinglePhaseThermalConductivityBaseUpdate( arrayView3d< real64 > const & effectiveConductivity, + arrayView3d< real64 > const & dEffectiveConductivity_dT ) + : m_effectiveConductivity( effectiveConductivity ), + m_dEffectiveConductivity_dT( dEffectiveConductivity_dT ) {} /// View on the cell-wise effective conductivities arrayView3d< real64 > m_effectiveConductivity; + /// View on the derivative of effective conductivities w.r.t. temperature + arrayView3d< real64 > m_dEffectiveConductivity_dT; private: /** @@ -125,12 +127,25 @@ class SinglePhaseThermalConductivityBase : public ConstitutiveBase virtual void update( arrayView2d< real64 const > const & porosity ) const { GEOS_UNUSED_VAR( porosity ); } + /** + * @brief Update the thermal conductivity state + * @param[in] temperature the temperature field + */ + virtual void updateFromTemperature( arrayView1d< real64 const > const & temperature ) const + { GEOS_UNUSED_VAR( temperature ); } + /** * @brief Getter for the effective conductivities in the subRegion * @return an arrayView of effective conductivities */ arrayView3d< real64 const > effectiveConductivity() const { return m_effectiveConductivity; } + /** + * @brief Getter for the derivative of effective conductivities in the subRegion w.r.t. temperature + * @return an arrayView of derivative of effective conductivities w.r.t. temperature + */ + arrayView3d< real64 const > dEffectiveConductivity_dT() const { return m_dEffectiveConductivity_dT; } + private: /** @@ -147,6 +162,8 @@ class SinglePhaseThermalConductivityBase : public ConstitutiveBase /// cell-wise effective conductivities in the subregion array3d< real64 > m_effectiveConductivity; + /// Derivative of effective conductivities w.r.t. temperature + array3d< real64 > m_dEffectiveConductivity_dT; }; } // namespace constitutive diff --git a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivitySelector.hpp b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivitySelector.hpp index 1fe3bc24a21..689dc17d22b 100644 --- a/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivitySelector.hpp +++ b/src/coreComponents/constitutive/thermalConductivity/SinglePhaseThermalConductivitySelector.hpp @@ -21,7 +21,7 @@ #define GEOS_CONSTITUTIVE_SINGLEPHASE_THERMALCONDUCTIVITY_THERMALCONDUCTIVITYSELECTOR_HPP #include "constitutive/ConstitutivePassThruHandler.hpp" -#include "constitutive/thermalConductivity/SinglePhaseConstantThermalConductivity.hpp" +#include "constitutive/thermalConductivity/SinglePhaseThermalConductivity.hpp" namespace geos { @@ -33,14 +33,14 @@ template< typename LAMBDA > void constitutiveUpdatePassThru( SinglePhaseThermalConductivityBase const & thermalConductivity, LAMBDA && lambda ) { - ConstitutivePassThruHandler< SinglePhaseConstantThermalConductivity >::execute( thermalConductivity, std::forward< LAMBDA >( lambda ) ); + ConstitutivePassThruHandler< SinglePhaseThermalConductivity >::execute( thermalConductivity, std::forward< LAMBDA >( lambda ) ); } template< typename LAMBDA > void constitutiveUpdatePassThru( SinglePhaseThermalConductivityBase & thermalConductivity, LAMBDA && lambda ) { - ConstitutivePassThruHandler< SinglePhaseConstantThermalConductivity >::execute( thermalConductivity, std::forward< LAMBDA >( lambda ) ); + ConstitutivePassThruHandler< SinglePhaseThermalConductivity >::execute( thermalConductivity, std::forward< LAMBDA >( lambda ) ); } } // namespace constitutive diff --git a/src/coreComponents/constitutive/thermalConductivity/ThermalConductivityFields.hpp b/src/coreComponents/constitutive/thermalConductivity/ThermalConductivityFields.hpp index fc259f25e29..52d85814310 100644 --- a/src/coreComponents/constitutive/thermalConductivity/ThermalConductivityFields.hpp +++ b/src/coreComponents/constitutive/thermalConductivity/ThermalConductivityFields.hpp @@ -40,6 +40,14 @@ DECLARE_FIELD( effectiveConductivity, WRITE_AND_READ, "Effective conductivity" ); +DECLARE_FIELD( dEffectiveConductivity_dT, + "dEffectiveConductivity_dT", + array3d< real64 >, + 0, + LEVEL_3, + WRITE_AND_READ, + "Derivative of effective conductivity w.r.t. temperature" ); + DECLARE_FIELD( rockThermalConductivity, "rockThermalConductivity", array3d< real64 >, diff --git a/src/coreComponents/physicsSolvers/fluidFlow/SinglePhaseBase.cpp b/src/coreComponents/physicsSolvers/fluidFlow/SinglePhaseBase.cpp index 4468100083c..450019e5731 100644 --- a/src/coreComponents/physicsSolvers/fluidFlow/SinglePhaseBase.cpp +++ b/src/coreComponents/physicsSolvers/fluidFlow/SinglePhaseBase.cpp @@ -318,29 +318,24 @@ void SinglePhaseBase::updateEnergy( ElementSubRegionBase & subRegion ) const void SinglePhaseBase::updateSolidInternalEnergyModel( ObjectManagerBase & dataGroup ) const { - arrayView1d< real64 const > const temp = dataGroup.getField< fields::flow::temperature >(); + arrayView1d< real64 const > const temperature = dataGroup.getField< fields::flow::temperature >(); string const & solidInternalEnergyName = dataGroup.getReference< string >( viewKeyStruct::solidInternalEnergyNamesString() ); SolidInternalEnergy & solidInternalEnergy = getConstitutiveModel< SolidInternalEnergy >( dataGroup, solidInternalEnergyName ); SolidInternalEnergy::KernelWrapper solidInternalEnergyWrapper = solidInternalEnergy.createKernelUpdates(); - thermalSinglePhaseBaseKernels::SolidInternalEnergyUpdateKernel::launch< parallelDevicePolicy<> >( dataGroup.size(), solidInternalEnergyWrapper, temp ); + thermalSinglePhaseBaseKernels::SolidInternalEnergyUpdateKernel::launch< parallelDevicePolicy<> >( dataGroup.size(), solidInternalEnergyWrapper, temperature ); } void SinglePhaseBase::updateThermalConductivity( ElementSubRegionBase & subRegion ) const { - //START_SPHINX_INCLUDE_COUPLEDSOLID - CoupledSolidBase const & porousSolid = - getConstitutiveModel< CoupledSolidBase >( subRegion, subRegion.template getReference< string >( viewKeyStruct::solidNamesString() ) ); - //END_SPHINX_INCLUDE_COUPLEDSOLID - - arrayView2d< real64 const > const porosity = porousSolid.getPorosity(); - string const & thermalConductivityName = subRegion.template getReference< string >( viewKeyStruct::thermalConductivityNamesString() ); SinglePhaseThermalConductivityBase const & conductivityMaterial = getConstitutiveModel< SinglePhaseThermalConductivityBase >( subRegion, thermalConductivityName ); - conductivityMaterial.update( porosity ); + + arrayView1d< real64 const > const & temperature = subRegion.template getField< fields::flow::temperature >(); + conductivityMaterial.updateFromTemperature( temperature ); } real64 SinglePhaseBase::updateFluidState( ElementSubRegionBase & subRegion ) const diff --git a/src/coreComponents/physicsSolvers/fluidFlow/ThermalSinglePhaseFVMKernels.hpp b/src/coreComponents/physicsSolvers/fluidFlow/ThermalSinglePhaseFVMKernels.hpp index 5c4973d94b8..b108ae79339 100644 --- a/src/coreComponents/physicsSolvers/fluidFlow/ThermalSinglePhaseFVMKernels.hpp +++ b/src/coreComponents/physicsSolvers/fluidFlow/ThermalSinglePhaseFVMKernels.hpp @@ -89,7 +89,9 @@ class FaceBasedAssemblyKernel : public singlePhaseFVMKernels::FaceBasedAssemblyK using ThermalConductivityAccessors = StencilMaterialAccessors< constitutive::SinglePhaseThermalConductivityBase, - fields::thermalconductivity::effectiveConductivity >; + fields::thermalconductivity::effectiveConductivity, + fields::thermalconductivity::dEffectiveConductivity_dT >; + /** * @brief Constructor for the kernel interface @@ -133,7 +135,8 @@ class FaceBasedAssemblyKernel : public singlePhaseFVMKernels::FaceBasedAssemblyK m_enthalpy( thermalSinglePhaseFluidAccessors.get( fields::singlefluid::enthalpy {} ) ), m_dEnthalpy_dPres( thermalSinglePhaseFluidAccessors.get( fields::singlefluid::dEnthalpy_dPressure {} ) ), m_dEnthalpy_dTemp( thermalSinglePhaseFluidAccessors.get( fields::singlefluid::dEnthalpy_dTemperature {} ) ), - m_thermalConductivity( thermalConductivityAccessors.get( fields::thermalconductivity::effectiveConductivity {} ) ) + m_thermalConductivity( thermalConductivityAccessors.get( fields::thermalconductivity::effectiveConductivity {} ) ), + m_dThermalCond_dT( thermalConductivityAccessors.get( fields::thermalconductivity::dEffectiveConductivity_dT {} ) ) {} struct StackVariables : public Base::StackVariables @@ -156,10 +159,12 @@ class FaceBasedAssemblyKernel : public singlePhaseFVMKernels::FaceBasedAssemblyK using Base::StackVariables::localFlux; using Base::StackVariables::localFluxJacobian; - // Thermal transmissibility (for now, no derivatives) - + // Thermal transmissibility real64 thermalTransmissibility[maxNumConns][2]{}; + /// Derivatives of thermal transmissibility with respect to temperature + real64 dThermalTrans_dT[maxNumConns][2]{}; + // Energy fluxes and derivatives /// Energy fluxes @@ -328,9 +333,9 @@ class FaceBasedAssemblyKernel : public singlePhaseFVMKernels::FaceBasedAssemblyK // We follow how the thermal compositional multi-phase solver does to update the thermal transmissibility m_stencilWrapper.computeWeights( iconn, m_thermalConductivity, - m_thermalConductivity, // we have to pass something here, so we just use thermal conductivity + m_dThermalCond_dT, stack.thermalTransmissibility, - stack.dTrans_dPres ); // again, we have to pass something here, but this is unused for now + stack.dThermalTrans_dT ); localIndex k[2]; localIndex connectionIndex = 0; @@ -340,6 +345,7 @@ class FaceBasedAssemblyKernel : public singlePhaseFVMKernels::FaceBasedAssemblyK for( k[1] = k[0] + 1; k[1] < stack.numFluxElems; ++k[1] ) { real64 const thermalTrans[2] = { stack.thermalTransmissibility[connectionIndex][0], stack.thermalTransmissibility[connectionIndex][1] }; + real64 const dThermalTrans_dT[2] = { stack.dThermalTrans_dT[connectionIndex][0], stack.dThermalTrans_dT[connectionIndex][1] }; localIndex const seri[2] = {m_seri( iconn, k[0] ), m_seri( iconn, k[1] )}; localIndex const sesri[2] = {m_sesri( iconn, k[0] ), m_sesri( iconn, k[1] )}; @@ -353,7 +359,7 @@ class FaceBasedAssemblyKernel : public singlePhaseFVMKernels::FaceBasedAssemblyK localIndex const ei = sei[ke]; stack.energyFlux += thermalTrans[ke] * m_temp[er][esr][ei]; - stack.dEnergyFlux_dT[ke] += thermalTrans[ke]; + stack.dEnergyFlux_dT[ke] += thermalTrans[ke] + dThermalTrans_dT[ke] * m_temp[er][esr][ei]; } // add energyFlux and its derivatives to localFlux and localFluxJacobian @@ -420,6 +426,9 @@ class FaceBasedAssemblyKernel : public singlePhaseFVMKernels::FaceBasedAssemblyK /// View on thermal conductivity ElementViewConst< arrayView3d< real64 const > > m_thermalConductivity; + /// View on derivatives of thermal conductivity w.r.t. temperature + ElementViewConst< arrayView3d< real64 const > > m_dThermalCond_dT; + }; /** @@ -539,7 +548,8 @@ class DirichletFaceBasedAssemblyKernel : public singlePhaseFVMKernels::Dirichlet using ThermalConductivityAccessors = StencilMaterialAccessors< constitutive::SinglePhaseThermalConductivityBase, - fields::thermalconductivity::effectiveConductivity >; + fields::thermalconductivity::effectiveConductivity, + fields::thermalconductivity::dEffectiveConductivity_dT >; /** * @brief Constructor for the kernel interface @@ -591,7 +601,8 @@ class DirichletFaceBasedAssemblyKernel : public singlePhaseFVMKernels::Dirichlet m_enthalpy( thermalSinglePhaseFluidAccessors.get( fields::singlefluid::enthalpy {} ) ), m_dEnthalpy_dPres( thermalSinglePhaseFluidAccessors.get( fields::singlefluid::dEnthalpy_dPressure {} ) ), m_dEnthalpy_dTemp( thermalSinglePhaseFluidAccessors.get( fields::singlefluid::dEnthalpy_dTemperature {} ) ), - m_thermalConductivity( thermalConductivityAccessors.get( fields::thermalconductivity::effectiveConductivity {} ) ) + m_thermalConductivity( thermalConductivityAccessors.get( fields::thermalconductivity::effectiveConductivity {} ) ), + m_dThermalCond_dT( thermalConductivityAccessors.get( fields::thermalconductivity::dEffectiveConductivity_dT {} ) ) {} @@ -682,14 +693,17 @@ class DirichletFaceBasedAssemblyKernel : public singlePhaseFVMKernels::Dirichlet // Contribution of energy conduction through the solid phase real64 thermalTrans = 0.0; - real64 dThermalTrans_dPerm[3]{}; // not used + real64 dThermalTrans_dThermalCond[3]{}; m_stencilWrapper.computeWeights( iconn, m_thermalConductivity, thermalTrans, - dThermalTrans_dPerm ); + dThermalTrans_dThermalCond ); + + real64 const dThermalTrans_dT = LvArray::tensorOps::AiBi< 3 >( dThermalTrans_dThermalCond, m_dThermalCond_dT[er][esr][ei][0] ); - stack.energyFlux += thermalTrans * ( m_temp[er][esr][ei] - m_faceTemp[kf] ); - stack.dEnergyFlux_dT += thermalTrans; + real64 const deltaT = m_temp[er][esr][ei] - m_faceTemp[kf]; + stack.energyFlux += thermalTrans * deltaT; + stack.dEnergyFlux_dT += thermalTrans + dThermalTrans_dT * deltaT; // Add energyFlux and its derivatives to localFlux and localFluxJacobian integer const localRowIndexEnergy = numEqn - 1; @@ -744,6 +758,9 @@ class DirichletFaceBasedAssemblyKernel : public singlePhaseFVMKernels::Dirichlet /// View on thermal conductivity ElementViewConst< arrayView3d< real64 const > > m_thermalConductivity; + /// View on derivatives of thermal conductivity w.r.t. temperature + ElementViewConst< arrayView3d< real64 const > > m_dThermalCond_dT; + }; diff --git a/src/coreComponents/schema/docs/Constitutive.rst b/src/coreComponents/schema/docs/Constitutive.rst index c62cb08d281..6f5e6d38dd0 100644 --- a/src/coreComponents/schema/docs/Constitutive.rst +++ b/src/coreComponents/schema/docs/Constitutive.rst @@ -73,7 +73,7 @@ ProppantSlurryFluid node :ref:`XML_ProppantSlu ProppantSolidProppantPermeability node :ref:`XML_ProppantSolidProppantPermeability` ReactiveBrine node :ref:`XML_ReactiveBrine` ReactiveBrineThermal node :ref:`XML_ReactiveBrineThermal` -SinglePhaseConstantThermalConductivity node :ref:`XML_SinglePhaseConstantThermalConductivity` +SinglePhaseThermalConductivity node :ref:`XML_SinglePhaseThermalConductivity` SlipDependentPermeability node :ref:`XML_SlipDependentPermeability` SolidInternalEnergy node :ref:`XML_SolidInternalEnergy` TableCapillaryPressure node :ref:`XML_TableCapillaryPressure` diff --git a/src/coreComponents/schema/docs/Constitutive_other.rst b/src/coreComponents/schema/docs/Constitutive_other.rst index 1195cddf026..e9d48fcdcfc 100644 --- a/src/coreComponents/schema/docs/Constitutive_other.rst +++ b/src/coreComponents/schema/docs/Constitutive_other.rst @@ -73,7 +73,7 @@ ProppantSlurryFluid node :ref:`DATASTRUCTURE_ProppantS ProppantSolidProppantPermeability node :ref:`DATASTRUCTURE_ProppantSolidProppantPermeability` ReactiveBrine node :ref:`DATASTRUCTURE_ReactiveBrine` ReactiveBrineThermal node :ref:`DATASTRUCTURE_ReactiveBrineThermal` -SinglePhaseConstantThermalConductivity node :ref:`DATASTRUCTURE_SinglePhaseConstantThermalConductivity` +SinglePhaseThermalConductivity node :ref:`DATASTRUCTURE_SinglePhaseThermalConductivity` SlipDependentPermeability node :ref:`DATASTRUCTURE_SlipDependentPermeability` SolidInternalEnergy node :ref:`DATASTRUCTURE_SolidInternalEnergy` TableCapillaryPressure node :ref:`DATASTRUCTURE_TableCapillaryPressure` diff --git a/src/coreComponents/schema/docs/SinglePhaseConstantThermalConductivity.rst b/src/coreComponents/schema/docs/SinglePhaseConstantThermalConductivity.rst deleted file mode 100644 index d9dc99ad411..00000000000 --- a/src/coreComponents/schema/docs/SinglePhaseConstantThermalConductivity.rst +++ /dev/null @@ -1,10 +0,0 @@ - - -============================= ========= ======== =============================================================================== -Name Type Default Description -============================= ========= ======== =============================================================================== -name groupName required A name is required for any non-unique nodes -thermalConductivityComponents R1Tensor required xx, yy, and zz components of a diagonal thermal conductivity tensor [J/(s.m.K)] -============================= ========= ======== =============================================================================== - - diff --git a/src/coreComponents/schema/docs/SinglePhaseConstantThermalConductivity_other.rst b/src/coreComponents/schema/docs/SinglePhaseConstantThermalConductivity_other.rst deleted file mode 100644 index 02570b893e3..00000000000 --- a/src/coreComponents/schema/docs/SinglePhaseConstantThermalConductivity_other.rst +++ /dev/null @@ -1,9 +0,0 @@ - - -===================== ============== ====================== -Name Type Description -===================== ============== ====================== -effectiveConductivity real64_array3d Effective conductivity -===================== ============== ====================== - - diff --git a/src/coreComponents/schema/docs/SinglePhaseThermalConductivity.rst b/src/coreComponents/schema/docs/SinglePhaseThermalConductivity.rst new file mode 100644 index 00000000000..1dc1947b73a --- /dev/null +++ b/src/coreComponents/schema/docs/SinglePhaseThermalConductivity.rst @@ -0,0 +1,12 @@ + + +===================================== ========= ======== =============================================================================================================== +Name Type Default Description +===================================== ========= ======== =============================================================================================================== +defaultThermalConductivityComponents R1Tensor required xx, yy, and zz diagonal components of the default thermal conductivity tensor [J/(s.m.K)] +name groupName required A name is required for any non-unique nodes +referenceTemperature real64 0 The reference temperature at which the conductivity components are equal to the default values +thermalConductivityGradientComponents R1Tensor {0,0,0} xx, yy, and zz diagonal components of the thermal conductivity gradient tensor w.r.t. temperature [J/(s.m.K^2)] +===================================== ========= ======== =============================================================================================================== + + diff --git a/src/coreComponents/schema/docs/SinglePhaseThermalConductivity_other.rst b/src/coreComponents/schema/docs/SinglePhaseThermalConductivity_other.rst new file mode 100644 index 00000000000..cf5ae873411 --- /dev/null +++ b/src/coreComponents/schema/docs/SinglePhaseThermalConductivity_other.rst @@ -0,0 +1,10 @@ + + +========================= ============== ======================================================= +Name Type Description +========================= ============== ======================================================= +dEffectiveConductivity_dT real64_array3d Derivative of effective conductivity w.r.t. temperature +effectiveConductivity real64_array3d Effective conductivity +========================= ============== ======================================================= + + diff --git a/src/coreComponents/schema/schema.xsd b/src/coreComponents/schema/schema.xsd index 9f99b83e2c6..30fcdf27768 100644 --- a/src/coreComponents/schema/schema.xsd +++ b/src/coreComponents/schema/schema.xsd @@ -825,8 +825,8 @@ - - + + @@ -4223,7 +4223,7 @@ Local- Add jump stabilization on interior of macro elements--> - + @@ -5454,9 +5454,13 @@ If you want to do a three-phase simulation, please use instead wettingIntermedia - - - + + + + + + + diff --git a/src/coreComponents/schema/schema.xsd.other b/src/coreComponents/schema/schema.xsd.other index fac7e939187..a4c03ba8fff 100644 --- a/src/coreComponents/schema/schema.xsd.other +++ b/src/coreComponents/schema/schema.xsd.other @@ -1480,7 +1480,7 @@ - + @@ -2662,7 +2662,9 @@ - + + + diff --git a/src/coreComponents/unitTests/fluidFlowTests/testThermalCompMultiphaseFlow.cpp b/src/coreComponents/unitTests/fluidFlowTests/testThermalCompMultiphaseFlow.cpp index 6ff832d9036..e89a27b6a53 100644 --- a/src/coreComponents/unitTests/fluidFlowTests/testThermalCompMultiphaseFlow.cpp +++ b/src/coreComponents/unitTests/fluidFlowTests/testThermalCompMultiphaseFlow.cpp @@ -103,7 +103,7 @@ char const * xmlInput = solidModelName="nullSolid" porosityModelName="rockPorosity" permeabilityModelName="rockPerm" - solidInternalEnergyModelName="rockInternalEnergy" /> + solidInternalEnergyModelName="rockInternalEnergy"/> - + - :end-before: + :start-after: + :end-before: The thermal conductivity of the medium around the wellbore is defined in the ``SinglePhaseConstantThermalConductivity`` XML block as .. literalinclude:: ../../../../../../../inputFiles/singlePhaseFlow/thermalCompressible_2d_base.xml :language: xml - :start-after: - :end-before: + :start-after: + :end-before: The volumetric heat capacity of fluid is set to a negligible value to exclude thermal convection effect. It is defined in the ``ThermalCompressibleSinglePhaseFluid`` XML block as @@ -100,7 +100,7 @@ Results and benchmark A good agreement between the GEOS results and analytical results is shown in the figure below: -.. plot:: docs/sphinx/advancedExamples/validationStudies/wellboreProblems/pureThermalDiffusion/pureThermalDiffusionAroundWellbore.py +.. plot:: docs/sphinx/advancedExamples/validationStudies/wellboreProblems/linearThermalDiffusion/linearThermalDiffusion_plot.py ------------------------------------------------------------------ diff --git a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/linearThermalDiffusion/data_1.csv b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/linearThermalDiffusion/data_1.csv new file mode 100644 index 00000000000..27b265b8428 --- /dev/null +++ b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/linearThermalDiffusion/data_1.csv @@ -0,0 +1,1002 @@ 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b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/linearThermalDiffusion/linearThermalDiffusion_plot.py similarity index 82% rename from src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/pureThermalDiffusion/pureThermalDiffusionAroundWellbore.py rename to src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/linearThermalDiffusion/linearThermalDiffusion_plot.py index 7e45aa17ab7..9c364049289 100644 --- a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/pureThermalDiffusion/pureThermalDiffusionAroundWellbore.py +++ b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/linearThermalDiffusion/linearThermalDiffusion_plot.py @@ -15,9 +15,9 @@ def steadyState(Tin, Tout, Rin, Rout, radialCoordinate): def diffusionFunction(radialCoordinate, Rin, diffusionCoefficient, diffusionTime): return special.erfc( (radialCoordinate - Rin) / 2.0 / np.sqrt( diffusionCoefficient * diffusionTime ) ) -def computeTransientTemperature(Tin, Rin, radialCoordinate, thermalDiffusionCoefficient, diffusionTime): +def computeTransientTemperature(Tin, Tout, Rin, radialCoordinate, thermalDiffusionCoefficient, diffusionTime): # Ref. Wang and Papamichos (1994), https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/94WR01774 - return Tin * np.sqrt(Rin/radialCoordinate) * diffusionFunction(radialCoordinate, Rin, thermalDiffusionCoefficient, diffusionTime) + return Tout + (Tin-Tout) * np.sqrt(Rin/radialCoordinate) * diffusionFunction(radialCoordinate, Rin, thermalDiffusionCoefficient, diffusionTime) def computeThermalDiffusionCoefficient(thermalConductivity, volumetricHeatCapacity): return thermalConductivity / volumetricHeatCapacity @@ -55,14 +55,17 @@ def getLoadingFromXML(xmlFilePath): if fsParam.get('setNames') == "{ rpos }": Tout = float(fsParam.get('scale')) - thermalConductivity = float( extractDataFromXMLList( tree.find('Constitutive/SinglePhaseConstantThermalConductivity').get('thermalConductivityComponents') )[0] ) + tree_SinglePhaseThermalConductivities = tree.findall('Constitutive/SinglePhaseThermalConductivity') + + for tree_SinglePhaseThermalConductivity in tree_SinglePhaseThermalConductivities: + if tree_SinglePhaseThermalConductivity.get('name') == "thermalCond_linear": + thermalConductivity = float( extractDataFromXMLList( tree_SinglePhaseThermalConductivity.get('defaultThermalConductivityComponents') )[0] ) tree_SolidInternalEnergies = tree.findall('Constitutive/SolidInternalEnergy') for tree_SolidInternalEnergy in tree_SolidInternalEnergies: if tree_SolidInternalEnergy.get('name') == "rockInternalEnergy_linear": - volumetricHeatCapacity = float( tree_SolidInternalEnergy.get('volumetricHeatCapacity') ) - + volumetricHeatCapacity = float( tree_SolidInternalEnergy.get('referenceVolumetricHeatCapacity') ) permeability = float( extractDataFromXMLList( tree.find('Constitutive/ConstantPermeability').get('permeabilityComponents') )[0] ) @@ -92,15 +95,14 @@ def main(): for chart_idx, idx in enumerate([1, 2, 5, 10]): # Numerical results data = pd.read_csv(f'data_{idx}.csv') - radialCoordinate = data['elementCenter:0'] + radialCoordinate = (data['elementCenter:0']**2.0 + data['elementCenter:1']**2.0)**0.5 temperature = data['temperature'] - pressure = data['pressure'] diffusionTime = data['Time'][0] # Analytical results thermalDiffusionCoefficient = computeThermalDiffusionCoefficient(thermalConductivity, volumetricHeatCapacity) - T_transient = computeTransientTemperature(Tin, Rin, radialCoordinate, thermalDiffusionCoefficient, diffusionTime) + T_transient = computeTransientTemperature(Tin, Tout, Rin, radialCoordinate, thermalDiffusionCoefficient, diffusionTime) # Analytical results of the steady state regime for comparison T_steadyState = steadyState(Tin, Tout, Rin, Rout, radialCoordinate) @@ -109,7 +111,7 @@ def main(): # Temperature plt.subplot(2,2,chart_idx+1) plt.plot( radialCoordinate, temperature, 'k+' , label='GEOSX' ) - plt.plot( radialCoordinate, T_transient, 'r-' , label='Analytic' ) + plt.plot( radialCoordinate, T_transient, 'r-' , label='Analytic, infinite domain' ) plt.plot( radialCoordinate, T_steadyState, 'b-' , label='Steady State' ) if chart_idx==1: @@ -121,7 +123,7 @@ def main(): if chart_idx in [0,2]: plt.ylabel('Temperature (°C)') - plt.ylim(-10,100) + plt.ylim(-30,110) plt.xlim(0,1.0) plt.title('t = '+str(diffusionTime)+'(s)') plt.tight_layout() diff --git a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/pureThermalDiffusion/radialThermalDiffusionSketch.png b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/linearThermalDiffusion/radialThermalDiffusionSketch.png similarity index 100% rename from src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/pureThermalDiffusion/radialThermalDiffusionSketch.png rename to src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/linearThermalDiffusion/radialThermalDiffusionSketch.png diff --git a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion/data_1.csv b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion/data_1.csv 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b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentSinglePhaseThermalConductivity/Example.rst new file mode 100644 index 00000000000..aa8fbb0677e --- /dev/null +++ b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentSinglePhaseThermalConductivity/Example.rst @@ -0,0 +1,62 @@ +.. _AdvancedExampleWellboreNonLinearThermalDiffusionTemperatureDependentSinglePhaseThermalConductivity: + + +##################################################################################################################### +Non-Linear Thermal Diffusion Around a Wellbore: The Case with Temperature Dependent Single Phase Thermal Conductivity +##################################################################################################################### + +------------------------------------------------------------------ +Problem description +------------------------------------------------------------------ + +This example is an extension of the linear thermal diffusion problem presented in :ref:`AdvancedExamplePureThermalDiffusionWellbore` to model wellbore cooling upon CO2 injection. It uses the thermal single-phase flow solver to model a non-linear thermal diffusion problem around a wellbore where the single phase thermal conductivity of the porous rock depends linearly on the temperature. + + +**Input file** + +This benchmark example uses no external input file and everything required is +contained within two GEOS xml files that are located at: + +.. code-block:: console + + inputFiles/singlePhaseFlow/thermalCompressible_2d_base.xml + +and + +.. code-block:: console + + inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentSinglePhaseThermalConductivity_benchmark.xml + + +In this example, we focus on the ``Constitutive`` tag. + +----------------------------------------------------------- +Constitutive +----------------------------------------------------------- + +The reference value of the single phase thermal conductivity of the porous medium around the wellbore and its derivative with respect to temperature are defined in the ``SinglePhaseThermalConductivity`` XML block: + +.. literalinclude:: ../../../../../../../inputFiles/singlePhaseFlow/thermalCompressible_2d_base.xml + :language: xml + :start-after: + :end-before: + + +--------------------------------- +Results and benchmark +--------------------------------- + +A good agreement between the results obtained using GEOS and the reference results that are obtained by the classical finite difference method is shown in the figure below: + + +.. plot:: docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentSinglePhaseThermalConductivity/temperatureDependentSinglePhaseThermalConductivity_plot.py + + +------------------------------------------------------------------ +To go further +------------------------------------------------------------------ + +**Feedback on this example** + +This concludes the example of a non-linear thermal diffusion problem around a wellbore due to temperature dependent single phase thermal conductivity of porous rock. +For any feedback on this example, please submit a `GitHub issue on the project's GitHub page `_. diff --git a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentSinglePhaseThermalConductivity/data_1.csv b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentSinglePhaseThermalConductivity/data_1.csv new file mode 100644 index 00000000000..8771183d7fa --- /dev/null +++ b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentSinglePhaseThermalConductivity/data_1.csv @@ -0,0 +1,1002 @@ +Time,"elementCenter:0","elementCenter:1","elementCenter:2","temperature" +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan 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a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentSinglePhaseThermalConductivity/temperatureDependentSinglePhaseThermalConductivity_plot.py b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentSinglePhaseThermalConductivity/temperatureDependentSinglePhaseThermalConductivity_plot.py new file mode 100644 index 00000000000..a6ed534271d --- /dev/null +++ b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentSinglePhaseThermalConductivity/temperatureDependentSinglePhaseThermalConductivity_plot.py @@ -0,0 +1,205 @@ +import os +import sys + +import numpy as np +import matplotlib.pyplot as plt +import pandas as pd +import scipy.linalg +from scipy import special + +from scipy.sparse import diags +from scipy.sparse.linalg import spsolve + +from xml.etree import ElementTree + +# Analytical results for linear thermal behavior +def steadyState(Tin, Tout, Rin, Rout, radialCoordinate): + return Tin + (Tout - Tin) * (np.log(radialCoordinate) - np.log(Rin)) / (np.log(Rout) - np.log(Rin)) + +def diffusionFunction(radialCoordinate, Rin, diffusionCoefficient, diffusionTime): + return special.erfc( (radialCoordinate - Rin) / 2.0 / np.sqrt( diffusionCoefficient * diffusionTime ) ) + +def computeTransientTemperature(Tin, Tout, Rin, radialCoordinate, thermalDiffusionCoefficient, diffusionTime): + # Ref. Wang and Papamichos (1994), https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/94WR01774 + return Tout + (Tin-Tout) * np.sqrt(Rin/radialCoordinate) * diffusionFunction(radialCoordinate, Rin, thermalDiffusionCoefficient, diffusionTime) + +def computeThermalDiffusionCoefficient(thermalConductivity, volumetricHeatCapacity): + return thermalConductivity / volumetricHeatCapacity + +# Finite difference results for non-linear thermal behavior +def temperatureDependentThermalConductivity(lambda0, lambda_gradient, T, Treference): + return lambda0 + lambda_gradient*(T-Treference) + +def temperatureDependentVolumetricHeat(c0, c_gradient, T, Treference): + return c0 + c_gradient*(T-Treference) + +def coefficientMatrix(thermalConductivity, volumetricHeatCapacity, r, dt, N): + # Coefficients for the matrix + A = np.zeros((N+1, N+1)) + + for i in range(1,N): + dr = r[i] - r[i-1] + r_i = r[i] + + diffusivity_i = thermalConductivity[i]/volumetricHeatCapacity[i] + A[i, i-1] = - diffusivity_i * (dt/(dr**2) - dt/(2 * r_i * dr)) \ + + (thermalConductivity[i+1] - thermalConductivity[i-1])/volumetricHeatCapacity[i]*dt/4/(dr**2) + A[i, i] = 1.0 + 2.0 * diffusivity_i * dt / (dr**2) + A[i, i+1] = - diffusivity_i * (dt/(dr**2) + dt/(2 * r_i * dr)) \ + - (thermalConductivity[i+1] - thermalConductivity[i-1])/volumetricHeatCapacity[i]*dt/4/(dr**2) + + # Boundary conditions + # No-flux at r=0 approximated by setting the flux between the first two cells to zero + A[0, 0] = 1.0 + A[N, N] = 1.0 + return A + +def solve_radial_diffusion(r, tmax, dt, Tin, Tout, lambda0, lambda_gradient, c0, c_gradient, Treference): + N = len(r)-1 + # Time setup + n_steps = int(tmax / dt) + + # Time-stepping + T = np.zeros(N+1) + Tout # initial condition u(r, 0) + T[0] = Tin + for step in range(n_steps): + thermalConductivity = temperatureDependentThermalConductivity(lambda0, lambda_gradient, T, Treference) + + volumetricHeatCapacity = temperatureDependentVolumetricHeat(c0, c_gradient, T, Treference) + + A = coefficientMatrix(thermalConductivity, volumetricHeatCapacity, r, dt, N) + T = spsolve(A, T) + + return T + + +def extractDataFromXMLList(paramList): + # Extract data from a list in XML such as "{ 1, 2, 3}" + return paramList.replace('{', '').replace('}', '').strip().split(',') + +def getWellboreGeometryFromXML(xmlFilePath): + tree = ElementTree.parse(xmlFilePath) + + meshParam = tree.find('Mesh/InternalWellbore') + radii = extractDataFromXMLList( meshParam.get("radius") ) + + Rin = float(radii[0]) + Rout = float(radii[-1]) + + return [Rin, Rout] + +def getLoadingFromXML(xmlFilePath): + tree = ElementTree.parse(xmlFilePath) + fsParams = tree.findall('FieldSpecifications/FieldSpecification') + + for fsParam in fsParams: + if ( (fsParam.get('fieldName') == "pressure") & (fsParam.get('initialCondition') != "1") ): + if fsParam.get('setNames') == "{ rneg }": + Pin = float(fsParam.get('scale')) + if fsParam.get('setNames') == "{ rpos }": + Pout = float(fsParam.get('scale')) + + for fsParam in fsParams: + if ( (fsParam.get('fieldName') == "temperature") & (fsParam.get('initialCondition') != "1") ): + if fsParam.get('setNames') == "{ rneg }": + Tin = float(fsParam.get('scale')) + if fsParam.get('setNames') == "{ rpos }": + Tout = float(fsParam.get('scale')) + + + tree_SinglePhaseThermalConductivities = tree.findall('Constitutive/SinglePhaseThermalConductivity') + + for tree_SinglePhaseThermalConductivity in tree_SinglePhaseThermalConductivities: + if tree_SinglePhaseThermalConductivity.get('name') == "thermalCond_nonLinear": + defaultThermalConductivity = float( extractDataFromXMLList( tree_SinglePhaseThermalConductivity.get('defaultThermalConductivityComponents') )[0] ) + + thermalConductivityGradient = float( extractDataFromXMLList( tree_SinglePhaseThermalConductivity.get('thermalConductivityGradientComponents') )[0] ) + referenceTemperature = float( tree_SinglePhaseThermalConductivity.get('referenceTemperature') ) + + + tree_SolidInternalEnergies = tree.findall('Constitutive/SolidInternalEnergy') + + for tree_SolidInternalEnergy in tree_SolidInternalEnergies: + if tree_SolidInternalEnergy.get('name') == "rockInternalEnergy_linear": + volumetricHeatCapacity = float( tree_SolidInternalEnergy.get('referenceVolumetricHeatCapacity') ) + dVolumetricHeatCapacity_dTemperature = 0.0 + + + permeability = float( extractDataFromXMLList( tree.find('Constitutive/ConstantPermeability').get('permeabilityComponents') )[0] ) + + porosity = float( tree.find('Constitutive/PressurePorosity').get('defaultReferencePorosity') ) + + fluidViscosity = float( tree.find('Constitutive/ThermalCompressibleSinglePhaseFluid').get('defaultViscosity') ) + + fluidCompressibility = float( tree.find('Constitutive/ThermalCompressibleSinglePhaseFluid').get('compressibility') ) + + fluidThermalExpansionCoefficient = float( tree.find('Constitutive/ThermalCompressibleSinglePhaseFluid').get('thermalExpansionCoeff') ) + + return [Pin, Pout, Tin, Tout, defaultThermalConductivity, thermalConductivityGradient, referenceTemperature, volumetricHeatCapacity, dVolumetricHeatCapacity_dTemperature, permeability, porosity, fluidViscosity, fluidCompressibility, fluidThermalExpansionCoefficient] + + +def main(): + + xmlFilePath = "../../../../../../../inputFiles/singlePhaseFlow/" + + Rin, Rout = getWellboreGeometryFromXML(xmlFilePath+"thermalCompressible_temperatureDependentSinglePhaseThermalConductivity_benchmark.xml") + + Pin, Pout, Tin, Tout, defaultThermalConductivity, thermalConductivityGradient, referenceTemperature, volumetricHeatCapacity, dVolumetricHeatCapacity_dTemperature, permeability, porosity, fluidViscosity, fluidCompressibility, fluidThermalExpansionCoefficient = getLoadingFromXML(xmlFilePath+"thermalCompressible_2d_base.xml") + + plt.figure(figsize=(10,7)) + font = {'size' : 16} + plt.rc('font', **font) + + for chart_idx, idx in enumerate([1, 2, 5, 10]): + # Numerical results + data = pd.read_csv(f'data_{idx}.csv') + data.dropna(inplace=True) + data.drop_duplicates(inplace=True) + data.reset_index(drop=True, inplace=True) + + radialCoordinate = (data['elementCenter:0']**2.0 + data['elementCenter:1']**2.0)**0.5 + temperature = data['temperature'] + #pressure = data['pressure'] + diffusionTime = data['Time'][0] + + # Analytical results for linear thermal behavior, for comparison + radialCoordinate_anal = np.arange(Rin, Rout, (Rout-Rin)/100) + + thermalDiffusionCoefficient = computeThermalDiffusionCoefficient(defaultThermalConductivity, volumetricHeatCapacity) + + T_transient_linear = computeTransientTemperature(Tin, Tout, Rin, radialCoordinate_anal, thermalDiffusionCoefficient, diffusionTime) + + # Analytical results of the steady state regime for comparison + T_steadyState = steadyState(Tin, Tout, Rin, Rout, radialCoordinate_anal) + + # Finite different results for non-linear thermal behavior + + T_transient_nonLinear = solve_radial_diffusion(radialCoordinate_anal, diffusionTime, diffusionTime/1000, Tin, Tout, defaultThermalConductivity, thermalConductivityGradient, volumetricHeatCapacity, dVolumetricHeatCapacity_dTemperature, referenceTemperature) + + # Visualization + # Temperature + plt.subplot(2,2,chart_idx+1) + plt.plot( radialCoordinate, temperature, 'k+' , label='GEOS' ) + plt.plot( radialCoordinate_anal, T_transient_nonLinear, 'g.' , label='FDM Non-Linear' ) + plt.plot( radialCoordinate_anal, T_transient_linear, 'r-' , label='Analytic Linear' ) + plt.plot( radialCoordinate_anal, T_steadyState, 'b-' , label='Steady State' ) + + if chart_idx==1: + plt.legend() + + if chart_idx in [2,3]: + plt.xlabel('Radial distance from well center') + + if chart_idx in [0,2]: + plt.ylabel('Temperature (°C)') + + plt.ylim(Tin-10,Tout+10) + plt.xlim(0.1,0.3) + plt.title('t = '+str(diffusionTime)+'(s)') + plt.tight_layout() + + plt.show() + +if __name__ == "__main__": + main() + diff --git a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion/Example.rst b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentVolumetricHeatCapacity/Example.rst similarity index 70% rename from src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion/Example.rst rename to src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentVolumetricHeatCapacity/Example.rst index 9c728e39f33..959302bd7a2 100644 --- a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion/Example.rst +++ b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentVolumetricHeatCapacity/Example.rst @@ -1,9 +1,9 @@ -.. _AdvancedExampleNonLinearThermalDiffusionWellbore: +.. _AdvancedWellboreExampleNonLinearThermalDiffusionTemperatureDependentVolumetricHeatCapacity: -#################################################### -Non-Linear Thermal Diffusion Around a Wellbore -#################################################### +############################################################################################################ +Non-Linear Thermal Diffusion Around a Wellbore: The Case with Temperature Dependent Volumetric Heat Capacity +############################################################################################################ ------------------------------------------------------------------ Problem description @@ -25,7 +25,7 @@ and .. code-block:: console - inputFiles/singlePhaseFlow/thermalCompressible_nonLinear_2d_benchmark.xml + inputFiles/singlePhaseFlow/thermalCompressible_temperatureDependentVolumetricHeatCapacity_benchmark.xml In this example, we focus on the ``Constitutive`` tag. @@ -46,10 +46,10 @@ The reference value of the volumetric heat capacity of the medium around the wel Results and benchmark --------------------------------- -A good agreement between the results obtained using GEOS and the analytical results is shown in the figure below: +A good agreement between the results obtained using GEOS and the reference results that are obtained by the classical finite difference method is shown in the figure below: -.. plot:: docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion/nonLinearThermalDiffusionAroundWellbore.py +.. plot:: docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentVolumetricHeatCapacity/temperatureDependentVolumetricHeatCapacity_plot.py ------------------------------------------------------------------ @@ -58,5 +58,5 @@ To go further **Feedback on this example** -This concludes the example of a non-linear thermal diffusion problem around a wellbore. +This concludes the example of a non-linear thermal diffusion problem around a wellbore due to temperature dependent volumetric heat capacity of rock. For any feedback on this example, please submit a `GitHub issue on the project's GitHub page `_. diff --git a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentVolumetricHeatCapacity/data_1.csv b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentVolumetricHeatCapacity/data_1.csv new file mode 100644 index 00000000000..92fbae1a86a --- /dev/null +++ b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentVolumetricHeatCapacity/data_1.csv @@ -0,0 +1,1002 @@ +Time,"elementCenter:0","elementCenter:1","elementCenter:2","temperature" +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan +10000,nan,nan,nan,nan 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a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion/nonLinearThermalDiffusionAroundWellbore.py b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentVolumetricHeatCapacity/temperatureDependentVolumetricHeatCapacity_plot.py similarity index 68% rename from src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion/nonLinearThermalDiffusionAroundWellbore.py rename to src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentVolumetricHeatCapacity/temperatureDependentVolumetricHeatCapacity_plot.py index 39a4c1e8a00..cb3f51e16fe 100644 --- a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion/nonLinearThermalDiffusionAroundWellbore.py +++ b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/nonLinearThermalDiffusion_TemperatureDependentVolumetricHeatCapacity/temperatureDependentVolumetricHeatCapacity_plot.py @@ -19,9 +19,9 @@ def steadyState(Tin, Tout, Rin, Rout, radialCoordinate): def diffusionFunction(radialCoordinate, Rin, diffusionCoefficient, diffusionTime): return special.erfc( (radialCoordinate - Rin) / 2.0 / np.sqrt( diffusionCoefficient * diffusionTime ) ) -def computeTransientTemperature(Tin, Rin, radialCoordinate, thermalDiffusionCoefficient, diffusionTime): +def computeTransientTemperature(Tin, Tout, Rin, radialCoordinate, thermalDiffusionCoefficient, diffusionTime): # Ref. Wang and Papamichos (1994), https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/94WR01774 - return Tin * np.sqrt(Rin/radialCoordinate) * diffusionFunction(radialCoordinate, Rin, thermalDiffusionCoefficient, diffusionTime) + return Tout + (Tin-Tout) * np.sqrt(Rin/radialCoordinate) * diffusionFunction(radialCoordinate, Rin, thermalDiffusionCoefficient, diffusionTime) def computeThermalDiffusionCoefficient(thermalConductivity, volumetricHeatCapacity): return thermalConductivity / volumetricHeatCapacity @@ -40,29 +40,33 @@ def coefficientMatrix(thermalConductivity, volumetricHeatCapacity, r, dt, N): for i in range(1,N): dr = r[i] - r[i-1] r_i = r[i] - A[i, i-1] = - thermalConductivity[i]/volumetricHeatCapacity[i] * (dt/(dr**2) - dt/(2 * r_i * dr)) \ + + diffusivity_i = thermalConductivity[i]/volumetricHeatCapacity[i] + A[i, i-1] = - diffusivity_i * (dt/(dr**2) - dt/(2 * r_i * dr)) \ + (thermalConductivity[i+1] - thermalConductivity[i-1])/volumetricHeatCapacity[i]*dt/4/(dr**2) - A[i, i] = 1 + 2 * thermalConductivity[i]/volumetricHeatCapacity[i] * dt / (dr**2) - A[i, i+1] = - thermalConductivity[i]/volumetricHeatCapacity[i] * (dt/(dr**2) + dt/(2 * r_i * dr)) \ + A[i, i] = 1.0 + 2.0 * diffusivity_i * dt / (dr**2) + A[i, i+1] = - diffusivity_i * (dt/(dr**2) + dt/(2 * r_i * dr)) \ - (thermalConductivity[i+1] - thermalConductivity[i-1])/volumetricHeatCapacity[i]*dt/4/(dr**2) # Boundary conditions # No-flux at r=0 approximated by setting the flux between the first two cells to zero - A[0, 0] = 1 - A[N, N] = 1 + A[0, 0] = 1.0 + A[N, N] = 1.0 return A -def solve_radial_diffusion(r, tmax, dt, Tin, lambda0, lambda_gradient, c0, c_gradient, Treference): +def solve_radial_diffusion(r, tmax, dt, Tin, Tout, lambda0, lambda_gradient, c0, c_gradient, Treference): N = len(r)-1 # Time setup n_steps = int(tmax / dt) # Time-stepping - T = np.zeros(N+1) # initial condition u(r, 0) + T = np.zeros(N+1) + Tout # initial condition u(r, 0) T[0] = Tin for step in range(n_steps): thermalConductivity = temperatureDependentThermalConductivity(lambda0, lambda_gradient, T, Treference) + volumetricHeatCapacity = temperatureDependentVolumetricHeat(c0, c_gradient, T, Treference) + A = coefficientMatrix(thermalConductivity, volumetricHeatCapacity, r, dt, N) T = spsolve(A, T) @@ -101,8 +105,14 @@ def getLoadingFromXML(xmlFilePath): Tin = float(fsParam.get('scale')) if fsParam.get('setNames') == "{ rpos }": Tout = float(fsParam.get('scale')) - - thermalConductivity = float( extractDataFromXMLList( tree.find('Constitutive/SinglePhaseConstantThermalConductivity').get('thermalConductivityComponents') )[0] ) + + + tree_SinglePhaseThermalConductivities = tree.findall('Constitutive/SinglePhaseThermalConductivity') + + for tree_SinglePhaseThermalConductivity in tree_SinglePhaseThermalConductivities: + if tree_SinglePhaseThermalConductivity.get('name') == "thermalCond_linear": + defaultThermalConductivity = float( extractDataFromXMLList( tree_SinglePhaseThermalConductivity.get('defaultThermalConductivityComponents') )[0] ) + thermalConductivityGradient = 0.0 tree_SolidInternalEnergies = tree.findall('Constitutive/SolidInternalEnergy') @@ -112,6 +122,7 @@ def getLoadingFromXML(xmlFilePath): dVolumetricHeatCapacity_dTemperature = float( tree_SolidInternalEnergy.get('dVolumetricHeatCapacity_dTemperature') ) referenceTemperature = float( tree_SolidInternalEnergy.get('referenceTemperature') ) + permeability = float( extractDataFromXMLList( tree.find('Constitutive/ConstantPermeability').get('permeabilityComponents') )[0] ) porosity = float( tree.find('Constitutive/PressurePorosity').get('defaultReferencePorosity') ) @@ -122,16 +133,16 @@ def getLoadingFromXML(xmlFilePath): fluidThermalExpansionCoefficient = float( tree.find('Constitutive/ThermalCompressibleSinglePhaseFluid').get('thermalExpansionCoeff') ) - return [Pin, Pout, Tin, Tout, thermalConductivity, referenceVolumetricHeatCapacity, dVolumetricHeatCapacity_dTemperature, referenceTemperature, permeability, porosity, fluidViscosity, fluidCompressibility, fluidThermalExpansionCoefficient] + return [Pin, Pout, Tin, Tout, defaultThermalConductivity, thermalConductivityGradient, referenceTemperature, referenceVolumetricHeatCapacity, dVolumetricHeatCapacity_dTemperature, permeability, porosity, fluidViscosity, fluidCompressibility, fluidThermalExpansionCoefficient] def main(): xmlFilePath = "../../../../../../../inputFiles/singlePhaseFlow/" - Rin, Rout = getWellboreGeometryFromXML(xmlFilePath+"thermalCompressible_nonLinear_2d_benchmark.xml") + Rin, Rout = getWellboreGeometryFromXML(xmlFilePath+"thermalCompressible_temperatureDependentVolumetricHeatCapacity_benchmark.xml") - Pin, Pout, Tin, Tout, thermalConductivity, referenceVolumetricHeatCapacity, dVolumetricHeatCapacity_dTemperature, referenceTemperature, permeability, porosity, fluidViscosity, fluidCompressibility, fluidThermalExpansionCoefficient = getLoadingFromXML(xmlFilePath+"thermalCompressible_2d_base.xml") + Pin, Pout, Tin, Tout, defaultThermalConductivity, thermalConductivityGradient, referenceTemperature, volumetricHeatCapacity, dVolumetricHeatCapacity_dTemperature, permeability, porosity, fluidViscosity, fluidCompressibility, fluidThermalExpansionCoefficient = getLoadingFromXML(xmlFilePath+"thermalCompressible_2d_base.xml") plt.figure(figsize=(10,7)) font = {'size' : 16} @@ -144,29 +155,32 @@ def main(): data.drop_duplicates(inplace=True) data.reset_index(drop=True, inplace=True) - radialCoordinate = data['elementCenter:0'] + radialCoordinate = (data['elementCenter:0']**2.0 + data['elementCenter:1']**2.0)**0.5 temperature = data['temperature'] #pressure = data['pressure'] diffusionTime = data['Time'][0] # Analytical results for linear thermal behavior, for comparison - thermalDiffusionCoefficient = computeThermalDiffusionCoefficient(thermalConductivity, referenceVolumetricHeatCapacity) + radialCoordinate_anal = radialCoordinate# np.arange(Rin, Rout, (Rout-Rin)/100) + + thermalDiffusionCoefficient = computeThermalDiffusionCoefficient(defaultThermalConductivity, volumetricHeatCapacity) - T_transient_linear = computeTransientTemperature(Tin, Rin, radialCoordinate, thermalDiffusionCoefficient, diffusionTime) + T_transient_linear = computeTransientTemperature(Tin, Tout, Rin, radialCoordinate_anal, thermalDiffusionCoefficient, diffusionTime) # Analytical results of the steady state regime for comparison - T_steadyState = steadyState(Tin, Tout, Rin, Rout, radialCoordinate) + T_steadyState = steadyState(Tin, Tout, Rin, Rout, radialCoordinate_anal) # Finite different results for non-linear thermal behavior - T_transient_nonLinear = solve_radial_diffusion(radialCoordinate, diffusionTime, diffusionTime/100, Tin, thermalConductivity, 0, referenceVolumetricHeatCapacity, dVolumetricHeatCapacity_dTemperature, referenceTemperature) + + T_transient_nonLinear = solve_radial_diffusion(radialCoordinate_anal, diffusionTime, diffusionTime/100, Tin, Tout, defaultThermalConductivity, thermalConductivityGradient, volumetricHeatCapacity, dVolumetricHeatCapacity_dTemperature, referenceTemperature) # Visualization # Temperature plt.subplot(2,2,chart_idx+1) plt.plot( radialCoordinate, temperature, 'k+' , label='GEOS' ) - plt.plot( radialCoordinate, T_transient_nonLinear, 'g-' , label='FDM Non-Linear' ) - plt.plot( radialCoordinate, T_transient_linear, 'r-' , label='Analytic Linear' ) - plt.plot( radialCoordinate, T_steadyState, 'b-' , label='Steady State' ) + plt.plot( radialCoordinate_anal, T_transient_nonLinear, 'g-' , label='FDM Non-Linear' ) + plt.plot( radialCoordinate_anal, T_transient_linear, 'r-' , label='Analytic Linear' ) + plt.plot( radialCoordinate_anal, T_steadyState, 'b-' , label='Steady State' ) if chart_idx==1: plt.legend() @@ -177,13 +191,12 @@ def main(): if chart_idx in [0,2]: plt.ylabel('Temperature (°C)') - plt.ylim(-10,100) - plt.xlim(0,1.0) + plt.ylim(-30,110) + plt.xlim(0.,0.5) plt.title('t = '+str(diffusionTime)+'(s)') plt.tight_layout() plt.show() - if __name__ == "__main__": main() diff --git a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/pureThermalDiffusion/data_1.csv b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/pureThermalDiffusion/data_1.csv deleted file mode 100644 index 4e2e56defb8..00000000000 --- a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/pureThermalDiffusion/data_1.csv +++ /dev/null @@ -1,1002 +0,0 @@ -Time,"elementCenter:0","elementCenter:1","elementCenter:2","pressure","temperature" -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan -10000,nan,nan,nan,nan,nan 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-50000,0.99019,0.0097215,0.05,5242.9,0.00020997 -50000,0.99019,0.0097215,0.05,5242.9,0.00020997 -50000,0.99019,0.0097215,0.05,5242.9,0.00020997 -50000,0.99019,0.0097215,0.05,5242.9,0.00020997 -50000,nan,nan,nan,nan,nan diff --git a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/thermoPoroElasticWellbore/analyticalResults.py b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/thermoPoroElasticWellbore/analyticalResults.py index c4ae5d7c182..938f88b0700 100644 --- a/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/thermoPoroElasticWellbore/analyticalResults.py +++ b/src/docs/sphinx/advancedExamples/validationStudies/wellboreProblems/thermoPoroElasticWellbore/analyticalResults.py @@ -34,12 +34,12 @@ def getDataFromXML(xmlFilePathPrefix): defaultShearModulus = float( tree.find('Constitutive/ElasticIsotropic').get('defaultShearModulus') ) defaultDrainedLinearTEC = float( tree.find('Constitutive/ElasticIsotropic').get('defaultDrainedLinearTEC') ) defaultReferencePorosity = float( tree.find('Constitutive/BiotPorosity').get('defaultReferencePorosity') ) - grainBulkModulus = float( tree.find('Constitutive/BiotPorosity').get('grainBulkModulus') ) + grainBulkModulus = float( tree.find('Constitutive/BiotPorosity').get('defaultGrainBulkModulus') ) fluidCompressibility = float( tree.find('Constitutive/ThermalCompressibleSinglePhaseFluid').get('compressibility') ) fluidViscosity = float( tree.find('Constitutive/ThermalCompressibleSinglePhaseFluid').get('defaultViscosity') ) fluidThermalExpansionCoefficient = float( tree.find('Constitutive/ThermalCompressibleSinglePhaseFluid').get('thermalExpansionCoeff') ) - thermalConductivity = float( extractDataFromXMLList( tree.find('Constitutive/SinglePhaseConstantThermalConductivity').get('thermalConductivityComponents') )[0] ) - volumetricHeatCapacity = float( tree.find('Constitutive/SolidInternalEnergy').get('volumetricHeatCapacity') ) + thermalConductivity = float( extractDataFromXMLList( tree.find('Constitutive/SinglePhaseThermalConductivity').get('defaultThermalConductivityComponents') )[0] ) + volumetricHeatCapacity = float( tree.find('Constitutive/SolidInternalEnergy').get('referenceVolumetricHeatCapacity') ) permeability = float( extractDataFromXMLList( tree.find('Constitutive/ConstantPermeability').get('permeabilityComponents') )[0] ) return [ri, Ti, drainedBulkModulusRock, defaultShearModulus, defaultDrainedLinearTEC, defaultReferencePorosity, grainBulkModulus, fluidCompressibility, fluidViscosity, fluidThermalExpansionCoefficient, permeability, thermalConductivity, volumetricHeatCapacity]