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System requirements for larger input #17

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washedgram opened this issue Dec 3, 2019 · 0 comments
Open

System requirements for larger input #17

washedgram opened this issue Dec 3, 2019 · 0 comments

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@washedgram
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I am running this program on a shared cluster and using data for ~1,000 variant mutations worked within the constraints of system/memory usage for jobs on this cluster; however, trying it with 10,000 did not. Is it possible to estimate the system requirements/usage for both the chromatin.py and predict.py scripts as well as using the closest-features and sort-bed command 'strip'? I have to submit this information to the admin for running more intensive jobs.

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