DESCRIPTION

Package: cellpypes
Title: Cell Type Pipes for Single-Cell RNA Sequencing Data
Version: 0.2.1
Authors@R: 
    person(given = "Felix",
           family = "Frauhammer",
           role = c("aut", "cre"),
           email = "felixfrauhammer@gmail.com")
Description: Annotate single-cell RNA sequencing data manually based on
    marker gene thresholds.
    Find cell type rules (gene+threshold) through exploration,
    use the popular piping operator '%>%' to reconstruct complex
    cell type hierarchies.
    'cellpypes' models technical noise to find positive and negative cells for
    a given expression threshold and returns cell type labels or pseudobulks.
    Cite this package as Frauhammer (2022) <doi:10.5281/zenodo.6555728> and
    visit <https://github.com/FelixTheStudent/cellpypes> for tutorials and newest
    features.
URL: https://github.com/FelixTheStudent/cellpypes
BugReports: https://github.com/FelixTheStudent/cellpypes/issues
License: GPL (>= 3)
Encoding: UTF-8
LazyData: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.0
Suggests: 
    testthat (>= 3.0.0),
    knitr,
    rmarkdown,
    Seurat,
    DESeq2,
    RcppAnnoy,
    tibble,
    SeuratObject
Config/testthat/edition: 3
Imports: 
    scUtils,
    ggplot2,
    Matrix,
    rlang,
    viridis,
    cowplot,
    dplyr,
    scales,
    methods,
    scattermore
Depends: 
    R (>= 2.10)