From 389851ebd4967b8597c52b359d1cd2d5c184f9e6 Mon Sep 17 00:00:00 2001 From: Fong Chan Date: Wed, 7 Jul 2021 12:51:05 +0100 Subject: [PATCH 1/3] Lock in version --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 7a8661c4..494ffa59 100644 --- a/setup.py +++ b/setup.py @@ -120,6 +120,6 @@ #ext_modules=[d2s_module], # Run-time dependencies. (will be installed by pip when FRED2 is installed) - install_requires=['setuptools>=18.2', 'pandas', 'pyomo>=4.0','svmlight', 'PyMySQL', 'biopython', 'pyVCF', 'mhcflurry<=1.4.3', 'mhcnuggets'], + install_requires=['setuptools>=18.2', 'pandas', 'pyomo>=4.0','svmlight', 'PyMySQL==0.10.1', 'biopython', 'pyVCF', 'mhcflurry<=1.4.3', 'mhcnuggets'], ) From d31c415e6e98e60b333269055219446d07ff56e4 Mon Sep 17 00:00:00 2001 From: Fong Chan Date: Wed, 7 Jul 2021 12:56:16 +0100 Subject: [PATCH 2/3] Lock in biopython version --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 494ffa59..7e0439e8 100644 --- a/setup.py +++ b/setup.py @@ -120,6 +120,6 @@ #ext_modules=[d2s_module], # Run-time dependencies. (will be installed by pip when FRED2 is installed) - install_requires=['setuptools>=18.2', 'pandas', 'pyomo>=4.0','svmlight', 'PyMySQL==0.10.1', 'biopython', 'pyVCF', 'mhcflurry<=1.4.3', 'mhcnuggets'], + install_requires=['setuptools>=18.2', 'pandas', 'pyomo>=4.0','svmlight', 'PyMySQL==0.10.1', 'biopython=1.76', 'pyVCF', 'mhcflurry<=1.4.3', 'mhcnuggets'], ) From 378dda536275ccd19d54c0de0cca5a1937da823b Mon Sep 17 00:00:00 2001 From: Fong Chan Date: Wed, 7 Jul 2021 12:56:58 +0100 Subject: [PATCH 3/3] Bug fix --- setup.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/setup.py b/setup.py index 7e0439e8..3d0541a6 100644 --- a/setup.py +++ b/setup.py @@ -120,6 +120,6 @@ #ext_modules=[d2s_module], # Run-time dependencies. (will be installed by pip when FRED2 is installed) - install_requires=['setuptools>=18.2', 'pandas', 'pyomo>=4.0','svmlight', 'PyMySQL==0.10.1', 'biopython=1.76', 'pyVCF', 'mhcflurry<=1.4.3', 'mhcnuggets'], + install_requires=['setuptools>=18.2', 'pandas', 'pyomo>=4.0','svmlight', 'PyMySQL==0.10.1', 'biopython==1.76', 'pyVCF', 'mhcflurry<=1.4.3', 'mhcnuggets'], )