CITATION.cff

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "rcompendium" in publications use:'
type: software
license: GPL-2.0-or-later
title: 'rcompendium: Create a Package or Research Compendium Structure'
version: 1.3.9000
identifiers:
- type: doi
  value: 10.32614/CRAN.package.rcompendium
abstract: 'Makes easier the creation of R package or research compendium (i.e. a predefined
  files/folders structure) so that users can focus on the code/analysis instead of
  wasting time organizing files. A full ready-to-work structure is set up with some
  additional features: version control, remote repository creation, CI/CD configuration
  (check package integrity under several OS, test code with ''testthat'', and build
  and deploy website using ''pkgdown''). This package heavily relies on the R packages
  ''devtools'' and ''usethis'' and follows recommendations made by Wickham H. (2015)
  <ISBN:9781491910597> and Marwick B. et al. (2018) <https://doi.org/10.7287/peerj.preprints.3192v2>.'
authors:
- family-names: Casajus
  given-names: Nicolas
  email: nicolas.casajus@fondationbiodiversite.fr
  orcid: https://orcid.org/0000-0002-5537-5294
preferred-citation:
  type: manual
  title: 'rcompendium: An R package to create a package or research compendium structure'
  authors:
  - name: Casajus N.
  year: '2023'
  notes: R package version 1.3
  url: https://github.com/FRBCesab/rcompendium
repository: https://CRAN.R-project.org/package=rcompendium
repository-code: https://github.com/FRBCesab/rcompendium
url: https://frbcesab.github.io/rcompendium/
contact:
- family-names: Casajus
  given-names: Nicolas
  email: nicolas.casajus@fondationbiodiversite.fr
  orcid: https://orcid.org/0000-0002-5537-5294
keywords:
- package
- r
- reproducible-research
- research-compendium
references:
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
  version: '>= 2.10'
- type: software
  title: cffr
  abstract: 'cffr: Generate Citation File Format (''cff'') Metadata for R Packages'
  notes: Imports
  url: https://docs.ropensci.org/cffr/
  repository: https://CRAN.R-project.org/package=cffr
  authors:
  - family-names: Hernangómez
    given-names: Diego
    email: diego.hernangomezherrero@gmail.com
    orcid: https://orcid.org/0000-0001-8457-4658
  year: '2024'
  doi: 10.32614/CRAN.package.cffr
- type: software
  title: cli
  abstract: 'cli: Helpers for Developing Command Line Interfaces'
  notes: Imports
  url: https://cli.r-lib.org
  repository: https://CRAN.R-project.org/package=cli
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  year: '2024'
  doi: 10.32614/CRAN.package.cli
- type: software
  title: devtools
  abstract: 'devtools: Tools to Make Developing R Packages Easier'
  notes: Imports
  url: https://devtools.r-lib.org/
  repository: https://CRAN.R-project.org/package=devtools
  authors:
  - family-names: Wickham
    given-names: Hadley
  - family-names: Hester
    given-names: Jim
  - family-names: Chang
    given-names: Winston
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@rstudio.com
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2024'
  doi: 10.32614/CRAN.package.devtools
- type: software
  title: gert
  abstract: 'gert: Simple Git Client for R'
  notes: Imports
  url: https://docs.ropensci.org/gert/
  repository: https://CRAN.R-project.org/package=gert
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: jeroenooms@gmail.com
    orcid: https://orcid.org/0000-0002-4035-0289
  year: '2024'
  doi: 10.32614/CRAN.package.gert
- type: software
  title: gh
  abstract: 'gh: ''GitHub'' ''API'''
  notes: Imports
  url: https://gh.r-lib.org/
  repository: https://CRAN.R-project.org/package=gh
  authors:
  - family-names: Bryan
    given-names: Jennifer
  - family-names: Wickham
    given-names: Hadley
  year: '2024'
  doi: 10.32614/CRAN.package.gh
- type: software
  title: gtools
  abstract: 'gtools: Various R Programming Tools'
  notes: Imports
  url: https://github.com/r-gregmisc/gtools
  repository: https://CRAN.R-project.org/package=gtools
  authors:
  - family-names: Warnes
    given-names: Gregory R.
  - family-names: Bolker
    given-names: Ben
    email: bolker@mcmaster.ca
    orcid: https://orcid.org/0000-0002-2127-0443
  - family-names: Lumley
    given-names: Thomas
  - family-names: Magnusson
    given-names: Arni
  - family-names: Venables
    given-names: Bill
  - family-names: Ryodan
    given-names: Genei
  - family-names: Moeller
    given-names: Steffen
  year: '2024'
  doi: 10.32614/CRAN.package.gtools
- type: software
  title: renv
  abstract: 'renv: Project Environments'
  notes: Imports
  url: https://rstudio.github.io/renv/
  repository: https://CRAN.R-project.org/package=renv
  authors:
  - family-names: Ushey
    given-names: Kevin
    email: kevin@rstudio.com
    orcid: https://orcid.org/0000-0003-2880-7407
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
    orcid: https://orcid.org/0000-0003-4757-117X
  year: '2024'
  doi: 10.32614/CRAN.package.renv
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Imports
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2024'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: rstudioapi
  abstract: 'rstudioapi: Safely Access the RStudio API'
  notes: Imports
  url: https://rstudio.github.io/rstudioapi/
  repository: https://CRAN.R-project.org/package=rstudioapi
  authors:
  - family-names: Ushey
    given-names: Kevin
    email: kevin@rstudio.com
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Ritchie
    given-names: Gary
    email: gary@posit.co
  year: '2024'
  doi: 10.32614/CRAN.package.rstudioapi
- type: software
  title: stringr
  abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations'
  notes: Imports
  url: https://stringr.tidyverse.org
  repository: https://CRAN.R-project.org/package=stringr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  doi: 10.32614/CRAN.package.stringr
- type: software
  title: usethis
  abstract: 'usethis: Automate Package and Project Setup'
  notes: Imports
  url: https://usethis.r-lib.org
  repository: https://CRAN.R-project.org/package=usethis
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@posit.co
    orcid: https://orcid.org/0000-0002-6983-2759
  - family-names: Barrett
    given-names: Malcolm
    email: malcolmbarrett@gmail.com
    orcid: https://orcid.org/0000-0003-0299-5825
  - family-names: Teucher
    given-names: Andy
    email: andy.teucher@posit.co
    orcid: https://orcid.org/0000-0002-7840-692X
  year: '2024'
  doi: 10.32614/CRAN.package.usethis
- type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: xfun
  abstract: 'xfun: Supporting Functions for Packages Maintained by ''Yihui Xie'''
  notes: Imports
  url: https://github.com/yihui/xfun
  repository: https://CRAN.R-project.org/package=xfun
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2024'
  doi: 10.32614/CRAN.package.xfun
- type: software
  title: fs
  abstract: 'fs: Cross-Platform File System Operations Based on ''libuv'''
  notes: Suggests
  url: https://fs.r-lib.org
  repository: https://CRAN.R-project.org/package=fs
  authors:
  - family-names: Hester
    given-names: Jim
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  year: '2024'
  doi: 10.32614/CRAN.package.fs
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2024'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'
- type: software
  title: withr
  abstract: 'withr: Run Code ''With'' Temporarily Modified Global State'
  notes: Suggests
  url: https://withr.r-lib.org
  repository: https://CRAN.R-project.org/package=withr
  authors:
  - family-names: Hester
    given-names: Jim
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Müller
    given-names: Kirill
    email: krlmlr+r@mailbox.org
  - family-names: Ushey
    given-names: Kevin
    email: kevinushey@gmail.com
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Chang
    given-names: Winston
  year: '2024'
  doi: 10.32614/CRAN.package.withr