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Error with covert (screen shot attached.) #31

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paulxiong opened this issue Dec 24, 2020 · 2 comments
Open

Error with covert (screen shot attached.) #31

paulxiong opened this issue Dec 24, 2020 · 2 comments

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@paulxiong
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med2image -i ./input/1-1.dcm -d ./out
image

@rudolphpienaar
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Is your input DICOM file a 3D volume format? It seems that way given the warning of size (49,2457,1890) . Currently med2image only processes 2D DICOM filess, not 3D DICOM volumes.

You will first have to convert your DICOM volume to a series of 2D slice files.

Also, since this would be a useful feature to implement in future versions of med2image, perhaps you can share your input DICOM file so we can develop this functionality.

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@paulxiong
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Thank you. Yes, it is a 3D. Here is the link to download images directly. https://wiki.cancerimagingarchive.net/pages/viewpage.action?pageId=64685580
or you can get a file with the following link:
https://drive.google.com/file/d/1kpyMqB2JEXc3ifSBGeSNwMxcme1kTfAj/view?usp=sharing

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