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Subsets
ENVO is quite a large ontology, and many users don't want or need to work with the whole thing. We thus create 'subsets' or extracts of the ontology which contain only those terms that a user group asks for. We can export these subsets in OWL, but exporting in other formats (e.g. CSV, OBO, GraphML) is possible on request.
You can find our current, released subsets in OWL format here. To view a simple TSV with the terms associated to their subsets and PURLs, pleased see this report
Yes! We'd be happy to engineer an export for your purposes. Please create an issue on our tracker (you'll need a GitHub account) and we'll prepare the file for you. You can also tweet your request to us @envoTweets or e-mail our publicly archived mailing list.
You can see the current subsets here The primary ones are described below.
| Subset | Description |
|---|---|
| EnvO-Lite-GSC.owl | An export used by the Genomics Standards Consortium to tag 'omic data into broad categories. |
| EnvO-Lite-GSC.obo | Just like EnvO-Lite-GSC.owl, but in the simpler, OBO format |
| environmental_hazards.owl | An export used by the Sustainable Development Goals Interface Ontology and related projects to handle classes which correspond to natural disasters like earthquakes, flooding, etc. |
| wwfBiome.owl | A subset to address #196 |
| nlcd2011.owl | A subset to address #458 |
| envoPolar.owl | A subset for polar projects such as the FRAM programme |
| envoEmpo.owl | A subset to accommodate categories found to be informative in the Earth Microbiome Project |
| envoCesab.owl | An export tuned to the needs of CESAB's working groups. |
| envoOmics.owl | A successor to EnvO-Lite-GSC.owl tuned to the quickly developing needs of the 'omics community. |
| envoAstro.owl | A subset which contains classes of relevance to astronomical scale investigations. |
| Subset label | Description |
|---|---|
| envoAgronomy | An export that feeds the Agronomy Ontology with terms related to agronomic environments |
| envoGeOMe | An export which is being composed for the GeOMe project. Progress is tracked in issue #548 |
| envoConservation | An export which is being composed for the semantics of conservation processes, in close collaboration with the SDGIO. Progress is tracked in issue #574 and linked to several others such as #573, |