OWL-compliant?

[YasinEl]

Hello,

could it be that https://raw.githubusercontent.com/EnvironmentOntology/envo/master/subsets/biome-hierarchy.owl is not OWL-compliant or am I doing something wrong?

from owlready2 import get_ontology

onto = get_ontology('biome-hierarchy.owl').load()

gives

TypeError: 'http://purl.obolibrary.org/obo/NCIT_C16847' belongs to more than one entity types (cannot be both a property and a class/an individual)!

Thank you

[pbuttigieg]

That could be an import artifact from NCIT. A quick look at the Ontobee RDF doesn't show any class/instance confounding

@matentzn @cmungall why would we have NCIT terms in the biome subset at all ?

[pbuttigieg]

That could be an import artifact from NCIT. A quick look at the Ontobee RDF doesn't show any class/instance confounding

@matentzn @cmungall why would we have NCIT terms in the biome subset at all ?

[matentzn]

I cant see any mention of NCIT in that file, or anywhere else in ENVO (especially that specific ID)!

[pbuttigieg]

Spooky stuff - @YasinEl I also can't find any mention of NCIT_C16847 in http://purl.obolibrary.org/obo/envo/subsets/biome-hierarchy.owl

This may come from some import chain, but that's not in our control, I think

[YasinEl]

Thank you for having looked into it! I take it you were not able to reproduce the issue.

I will try to figure out if something strange is going on on my end then.

[pbuttigieg]

@YasinEl to be clear, I didn't run the commands you did, but just noted that the reported error doesn't seem to be coming from ENVO as far as I can tell

[pbuttigieg]

I'm closing this for now @YasinEl , but if you find out that there is indeed an issue with ENVO in further investigation, please reopen it