Compiler is intel
Using PFUNIT_PATH: /home/bhillma/codes/pfunit/builds/mpi-serial
==================================================
Running cmake for __command_line_test__/__command_line_test__.
==================================================
RUN: cmake -C Macros.cmake /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime -DCIME_CMAKE_MODULE_DIRECTORY=/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/CMake -DCMAKE_BUILD_TYPE=CESM_DEBUG -DPFUNIT_MPIRUN='' -DPFUNIT_PATH=/home/bhillma/codes/pfunit/builds/mpi-serial -DUSE_MPI_SERIAL=ON -DENABLE_GENF90=ON -DCMAKE_PROGRAM_PATH=/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/scripts/fortran_unit_testing/../../src/externals/genf90
loading initial cache file Macros.cmake
-- The Fortran compiler identification is Intel 16.0.2.20160204
-- The C compiler identification is Intel 16.0.2.20160204
-- Check for working Fortran compiler: /opt/intel/16.0/bin/intel64/ifort
-- Check for working Fortran compiler: /opt/intel/16.0/bin/intel64/ifort  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /opt/intel/16.0/bin/intel64/ifort supports Fortran 90
-- Checking whether /opt/intel/16.0/bin/intel64/ifort supports Fortran 90 -- yes
-- Check for working C compiler: /opt/intel/16.0/bin/intel64/icc
-- Check for working C compiler: /opt/intel/16.0/bin/intel64/icc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Found pFUnit: /home/bhillma/codes/pfunit/builds/mpi-serial/lib/libpfunit.a  
-- Found NetCDF_C: /projects/sems/install/toss3/sems/tpl/netcdf/4.4.1/intel/16.0.2/exo/lib/libnetcdf.so  
-- Checking NetCDF version
-- Checking NetCDF version - 4.4.1./*!<
-- Checking whether NetCDF has parallel support
-- Checking whether NetCDF has parallel support - no
-- Looking for nc_set_log_level
-- Looking for nc_set_log_level - not found
-- Found NetCDF_Fortran: /projects/sems/install/toss3/sems/tpl/netcdf/4.4.1/intel/16.0.2/exo/lib/libnetcdff.so  
-- Configuring done
-- Generating done
-- Build files have been written to: /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__
Scanning dependencies of target generate_pio
Scanning dependencies of target mct_project
[  2%] Generating test_wv_sat.F90
[  2%] Generating test_wv_sat_each_method.F90
[  2%] Generating test_shr_precip.F90
Scanning dependencies of target generate_shr_infnan_mod
[  2%] Generating test_shr_abort.F90
Scanning dependencies of target generate_shr_assert_mod
[  3%] Creating directories for 'mct_project'
[  4%] Generating pio.F90
[  5%] Generating shr_assert_mod.F90
[  5%] Generating shr_infnan_mod.F90
[  5%] Built target generate_shr_infnan_mod
[  5%] No download step for 'mct_project'
[  5%] Built target generate_shr_assert_mod
[  5%] Built target generate_pio
[  5%] No patch step for 'mct_project'
[  6%] Generating test_ndebug.F90
[  6%] No update step for 'mct_project'
[  7%] Generating test_igamma.F90
[  9%] Generating test_erf_r4.F90
[  9%] Performing configure step for 'mct_project'
Processing fileProcessing file  /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_assert_test/test_ndebug.pf/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_precip_test/test_shr_precip.pf

Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_wv_sat_test/test_wv_sat.pf
Processing fileProcessing file  /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_abort_test/test_shr_abort.pf/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_spfn_test/test_igamma.pf

Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_wv_sat_test/test_wv_sat_each_method.pf
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_spfn_test/test_erf_r4.pf
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_spfn_test//test_igamma.F90
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_assert_test//test_ndebug.F90
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_abort_test//test_shr_abort.F90
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_precip_test//test_shr_precip.F90
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_wv_sat_test//test_wv_sat.F90
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_spfn_test//test_erf_r4.F90
[  9%] Generating test_assert.F90
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_wv_sat_test//test_wv_sat_each_method.F90
[  9%] Generating test_assert_array.F90
[  9%] Generating test_erf_r8.F90
Scanning dependencies of target infnan_test_exe
Scanning dependencies of target shr_abort_mod_exe
Scanning dependencies of target shr_precip_mod_exe
Scanning dependencies of target shr_wv_sat_mod_exe
[ 10%] Building Fortran object src/share/test/unit/shr_infnan_test/CMakeFiles/infnan_test_exe.dir/__/__/__/util/shr_kind_mod.F90.o
[ 10%] Building Fortran object src/share/test/unit/shr_abort_test/CMakeFiles/shr_abort_mod_exe.dir/__/__/__/util/shr_kind_mod.F90.o
[ 11%] Building Fortran object src/share/test/unit/shr_precip_test/CMakeFiles/shr_precip_mod_exe.dir/__/__/__/util/shr_kind_mod.F90.o
[ 11%] Building Fortran object src/share/test/unit/shr_wv_sat_test/CMakeFiles/shr_wv_sat_mod_exe.dir/__/__/__/util/shr_kind_mod.F90.o
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_assert_test/test_assert.pf
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_assert_test/test_assert_array.pf
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_spfn_test/test_erf_r8.pf
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_assert_test//test_assert.F90
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_assert_test//test_assert_array.F90
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_spfn_test//test_erf_r8.F90
[ 11%] Building Fortran object src/share/test/unit/shr_wv_sat_test/CMakeFiles/shr_wv_sat_mod_exe.dir/__/__/__/util/shr_wv_sat_mod.F90.o
[ 12%] Generating test_gamma_factorial.F90
[ 12%] Generating test_macro.F90
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_spfn_test/test_gamma_factorial.pf
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_assert_test/test_macro.pf
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_assert_test//test_macro.F90
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_spfn_test//test_gamma_factorial.F90
Scanning dependencies of target spfn_test_exe
Scanning dependencies of target assert_test_exe
[ 12%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/__/__/__/util/shr_kind_mod.F90.o
[ 13%] Building Fortran object src/share/test/unit/shr_assert_test/CMakeFiles/assert_test_exe.dir/__/__/__/util/shr_kind_mod.F90.o
[ 13%] Building Fortran object src/share/test/unit/shr_infnan_test/CMakeFiles/infnan_test_exe.dir/__/__/__/__/__/csm_share/shr_infnan_mod.F90.o
[ 13%] Building Fortran object src/share/test/unit/shr_precip_test/CMakeFiles/shr_precip_mod_exe.dir/__/__/__/util/shr_const_mod.F90.o
[ 14%] Generating test_shr_string.F90
[ 14%] Building Fortran object src/share/test/unit/shr_abort_test/CMakeFiles/shr_abort_mod_exe.dir/__/__/__/unit_test_stubs/util/shr_abort_mod.abortthrows.F90.o
[ 14%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/__/__/__/__/__/csm_share/shr_infnan_mod.F90.o
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_string_test/test_shr_string.pf
[ 15%] Building Fortran object src/share/test/unit/shr_wv_sat_test/CMakeFiles/shr_wv_sat_mod_exe.dir/__/__/__/util/shr_const_mod.F90.o
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_string_test//test_shr_string.F90
Scanning dependencies of target shr_string_exe
[ 16%] Building Fortran object src/share/test/unit/shr_string_test/CMakeFiles/shr_string_exe.dir/__/__/__/util/shr_kind_mod.F90.o
[ 17%] Building Fortran object src/share/test/unit/shr_precip_test/CMakeFiles/shr_precip_mod_exe.dir/__/__/__/util/shr_precip_mod.F90.o
[ 17%] Building Fortran object src/share/test/unit/shr_string_test/CMakeFiles/shr_string_exe.dir/__/__/__/__/__/csm_share/shr_infnan_mod.F90.o
[ 17%] Building Fortran object src/share/test/unit/shr_infnan_test/CMakeFiles/infnan_test_exe.dir/test_infnan.F90.o
[ 17%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/__/__/__/unit_test_stubs/util/shr_abort_mod.abortthrows.F90.o
[ 17%] Building Fortran object src/share/test/unit/shr_precip_test/CMakeFiles/shr_precip_mod_exe.dir/test_shr_precip.F90.o
[ 18%] Linking Fortran executable infnan_test_exe
[ 19%] Building Fortran object src/share/test/unit/shr_string_test/CMakeFiles/shr_string_exe.dir/__/__/__/unit_test_stubs/util/shr_abort_mod.abortthrows.F90.o
[ 19%] Building Fortran object src/share/test/unit/shr_assert_test/CMakeFiles/assert_test_exe.dir/__/__/__/__/__/csm_share/shr_infnan_mod.F90.o
[ 20%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/__/__/__/util/shr_const_mod.F90.o
[ 21%] Building Fortran object src/share/test/unit/shr_string_test/CMakeFiles/shr_string_exe.dir/__/__/__/util/shr_strconvert_mod.F90.o
[ 21%] Built target infnan_test_exe
[ 21%] Building Fortran object src/share/test/unit/shr_string_test/CMakeFiles/shr_string_exe.dir/__/mock/shr_sys_mod.nompi_abortthrows.F90.o
[ 21%] Building Fortran object src/share/test/unit/shr_abort_test/CMakeFiles/shr_abort_mod_exe.dir/test_shr_abort.F90.o
[ 22%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/__/__/__/util/shr_strconvert_mod.F90.o
[ 24%] Building Fortran object src/share/test/unit/shr_precip_test/CMakeFiles/shr_precip_mod_exe.dir/home/bhillma/codes/pfunit/builds/mpi-serial/include/driver.F90.o
[ 24%] Building Fortran object src/share/test/unit/shr_wv_sat_test/CMakeFiles/shr_wv_sat_mod_exe.dir/test_wv_sat.F90.o
[ 25%] Generating test_toString.F90
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_strconvert_test/test_toString.pf
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_strconvert_test//test_toString.F90
[ 25%] Building Fortran object src/share/test/unit/shr_assert_test/CMakeFiles/assert_test_exe.dir/__/__/__/unit_test_stubs/util/shr_abort_mod.abortthrows.F90.o
Scanning dependencies of target shr_strconvert_exe
[ 25%] Building Fortran object src/share/test/unit/shr_strconvert_test/CMakeFiles/shr_strconvert_exe.dir/__/__/__/util/shr_kind_mod.F90.o
[ 25%] Building Fortran object src/share/test/unit/shr_string_test/CMakeFiles/shr_string_exe.dir/__/__/__/util/shr_log_mod.F90.o
checking whether the C compiler works... [ 26%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/__/__/__/util/shr_spfn_mod.F90.o
[ 27%] Building Fortran object src/share/test/unit/shr_abort_test/CMakeFiles/shr_abort_mod_exe.dir/home/bhillma/codes/pfunit/builds/mpi-serial/include/driver.F90.o
[ 27%] Linking Fortran executable shr_precip_mod_exe
yes
checking for C compiler default output file name... a.out
checking for suffix of executables... [ 27%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/__/__/__/util/shr_log_mod.F90.o
[ 27%] Building Fortran object src/share/test/unit/shr_wv_sat_test/CMakeFiles/shr_wv_sat_mod_exe.dir/test_wv_sat_each_method.F90.o
[ 27%] Linking Fortran executable shr_abort_mod_exe
[ 28%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/__/mock/shr_sys_mod.nompi_abortthrows.F90.o

checking whether we are cross compiling... [ 28%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/test_erf_r4.F90.o
[ 29%] Building Fortran object src/share/test/unit/shr_wv_sat_test/CMakeFiles/shr_wv_sat_mod_exe.dir/home/bhillma/codes/pfunit/builds/mpi-serial/include/driver.F90.o
no
checking for suffix of object files... [ 30%] Building Fortran object src/share/test/unit/shr_strconvert_test/CMakeFiles/shr_strconvert_exe.dir/__/__/__/__/__/csm_share/shr_infnan_mod.F90.o
[ 31%] Building Fortran object src/share/test/unit/shr_assert_test/CMakeFiles/assert_test_exe.dir/__/__/__/util/shr_strconvert_mod.F90.o
[ 32%] Building Fortran object src/share/test/unit/shr_string_test/CMakeFiles/shr_string_exe.dir/__/__/__/__/__/csm_share/shr_assert_mod.F90.o
o
checking whether we are using the GNU C compiler... [ 32%] Built target shr_abort_mod_exe
[ 32%] Linking Fortran executable shr_wv_sat_mod_exe
[ 33%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/test_erf_r8.F90.o
[ 34%] Building Fortran object src/share/test/unit/shr_assert_test/CMakeFiles/assert_test_exe.dir/__/mock/shr_sys_mod.nompi_abortthrows.F90.o
yes
checking whether /opt/intel/16.0/bin/intel64/icc accepts -g... [ 34%] Generating test_error_printers.F90
[ 34%] Building Fortran object src/share/test/unit/shr_strconvert_test/CMakeFiles/shr_strconvert_exe.dir/__/__/__/util/shr_strconvert_mod.F90.o
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/share/test/unit/shr_log_test/test_error_printers.pf
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_log_test//test_error_printers.F90
Scanning dependencies of target shr_log_exe
[ 35%] Building Fortran object src/share/test/unit/shr_log_test/CMakeFiles/shr_log_exe.dir/__/__/__/util/shr_kind_mod.F90.o
[ 35%] Building Fortran object src/share/test/unit/shr_assert_test/CMakeFiles/assert_test_exe.dir/__/__/__/util/shr_log_mod.F90.o
yes
checking for /opt/intel/16.0/bin/intel64/icc option to accept ISO C89... [ 36%] Building Fortran object src/share/test/unit/shr_strconvert_test/CMakeFiles/shr_strconvert_exe.dir/test_toString.F90.o
[ 36%] Building Fortran object src/share/test/unit/shr_log_test/CMakeFiles/shr_log_exe.dir/__/__/__/__/__/csm_share/shr_infnan_mod.F90.o
[ 36%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/test_gamma_factorial.F90.o
[ 36%] Built target shr_precip_mod_exe
[ 37%] Built target shr_wv_sat_mod_exe
[ 37%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/test_igamma.F90.o
[ 37%] Building Fortran object src/share/test/unit/shr_spfn_test/CMakeFiles/spfn_test_exe.dir/home/bhillma/codes/pfunit/builds/mpi-serial/include/driver.F90.o
[ 37%] Building Fortran object src/share/test/unit/shr_string_test/CMakeFiles/shr_string_exe.dir/__/__/__/util/shr_timer_mod.F90.o
[ 38%] Building Fortran object src/share/test/unit/shr_assert_test/CMakeFiles/assert_test_exe.dir/__/__/__/__/__/csm_share/shr_assert_mod.F90.o
none needed
checking how to run the C preprocessor... [ 39%] Building Fortran object src/share/test/unit/shr_log_test/CMakeFiles/shr_log_exe.dir/__/__/__/util/shr_strconvert_mod.F90.o
[ 39%] Building Fortran object src/share/test/unit/shr_string_test/CMakeFiles/shr_string_exe.dir/__/__/__/util/shr_string_mod.F90.o
[ 39%] Building Fortran object src/share/test/unit/shr_strconvert_test/CMakeFiles/shr_strconvert_exe.dir/home/bhillma/codes/pfunit/builds/mpi-serial/include/driver.F90.o
[ 39%] Generating int_ptr_vector_tests.pf
[ 39%] Building Fortran object src/share/test/unit/shr_log_test/CMakeFiles/shr_log_exe.dir/__/__/__/util/shr_log_mod.F90.o
[ 40%] Generating integer_vector_tests.pf
/opt/intel/16.0/bin/intel64/icc -E
[ 40%] Generating r8_vector_tests.pf
[ 41%] Linking Fortran executable spfn_test_exe
[ 42%] Building Fortran object src/share/test/unit/shr_string_test/CMakeFiles/shr_string_exe.dir/test_shr_string.F90.o
[ 43%] Linking Fortran executable shr_strconvert_exe
[ 44%] Building Fortran object src/share/test/unit/shr_log_test/CMakeFiles/shr_log_exe.dir/test_error_printers.F90.o
[ 44%] Building Fortran object src/share/test/unit/shr_log_test/CMakeFiles/shr_log_exe.dir/home/bhillma/codes/pfunit/builds/mpi-serial/include/driver.F90.o
[ 44%] Generating int_ptr_vector_tests.F90
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/dynamic_vector/int_ptr_vector_tests.pf
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/dynamic_vector//int_ptr_vector_tests.F90
[ 44%] Generating integer_vector_tests.F90
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/dynamic_vector/integer_vector_tests.pf
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/dynamic_vector//integer_vector_tests.F90
[ 45%] Generating r8_vector_tests.F90
Processing file /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/dynamic_vector/r8_vector_tests.pf
 ... Done.  Results in /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/dynamic_vector//r8_vector_tests.F90
[ 45%] Building Fortran object src/share/test/unit/shr_assert_test/CMakeFiles/assert_test_exe.dir/test_assert.F90.o
Scanning dependencies of target dynamic_vector_exe
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/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/src/share/test/unit/shr_assert_test/test_ndebug.F90(12): warning #6178: The return value of this FUNCTION has not been defined.   [UNREACHABLE_FUNCTION]
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CMakeFiles/vmath_test_exe.dir/__/__/__/util/shr_vmath_mod.F90.o: In function `shr_vmath_mod_mp_shr_vmath_sin_':
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CMakeFiles/vmath_test_exe.dir/__/__/__/util/shr_vmath_mod.F90.o: In function `shr_vmath_mod_mp_shr_vmath_cos_':
shr_vmath_mod.F90:(.text+0x216): undefined reference to `vdcos_'
make[2]: *** [src/share/test/unit/shr_vmath_test/vmath_test_exe] Error 1
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MPISERIAL ENABLED: BYPASSING MPI CHECK
FORT_SIZE IS PRESET TO real4double8
Checking Compiler Version
checking how to get the version output from /opt/intel/16.0/bin/intel64/ifort... -V
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checking how to define symbols for preprocessed Fortran... -D
checking how to get verbose linking output from /opt/intel/16.0/bin/intel64/ifort... -v
checking for Fortran libraries of /opt/intel/16.0/bin/intel64/ifort...  -L/projects/sems/install/toss3/sems/tpl/netcdf/4.4.1/intel/16.0.2/exo/lib -L/projects/sems/install/toss3/sems/tpl/hdf5/1.8.12/intel/16.0.2/base/lib -L/opt/intel/16.0/compiler/lib/intel64_lin -L/opt/rh/devtoolset-3/root/usr/lib/gcc/x86_64-redhat-linux/4.9.2/ -L/opt/rh/devtoolset-3/root/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64 -L/opt/rh/devtoolset-3/root/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/projects/sems/install/toss3/sems/tpl/netcdf/4.4.1/intel/16.0.2/exo/lib/ -L/projects/sems/install/toss3/sems/tpl/hdf5/1.8.12/intel/16.0.2/base/lib/ -L/opt/rh/devtoolset-3/root/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -ldl -lirc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
Hostname=skybridge-login2
Machine=x86_64
OS=Linux
Fortran Compiler is Intel ifort
checking for ranlib... ranlib

Output Variables: {CC=/opt/intel/16.0/bin/intel64/icc} {CFLAGS= -O2 -fp-model precise -std=gnu99 } {FC=/opt/intel/16.0/bin/intel64/ifort} {FCFLAGS= -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source -O0 } {PROGFCFLAGS=-assume byterecl}{CPPDEFS= -DSYSLINUX -DCPRINTEL} {OPT=} {DEBUG="-g"} {REAL8=-r8} {BIT64=} {ENDIAN=-convert big_endian} {MPIFC=/opt/intel/16.0/bin/intel64/ifort} {MPILIBS=-L/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/mct/mpi-serial -lmpi-serial} {MPIHEADER=-I/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/mct/mpi-serial} {INCLUDEFLAG=-I} {INCLUDEPATH=} {AR=ar cq} {RANLIB=ranlib} {BABELROOT=} {COMPILER_ROOT=} {PYTHON=} {PYTHONOPTS=} {FORT_SIZE=real4double8} {prefix=/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__} {SRCDIR=/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct} {FC_DEFINE=-D}

MPISERIAL ENABLED: CONFIGURING mpi-serial
configure: creating ./config.status
config.status: creating Makefile.conf
config.status: creating config.h
=== configuring in mpi-serial (/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__/mct/mpi-serial)
configure: running /bin/sh /home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/configure --disable-option-checking '--prefix=/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__'  '--enable-mpiserial' '--enable-debugging' 'CC=/opt/intel/16.0/bin/intel64/icc' 'FC=/opt/intel/16.0/bin/intel64/ifort' 'CFLAGS=  -O2 -fp-model precise -std=gnu99 ' 'FCFLAGS=   -convert big_endian -assume byterecl -ftz -traceback -assume realloc_lhs -fp-model source   -O0 ' 'SRCDIR=/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct' 'DEBUG="-g"' --cache-file=/dev/null --srcdir=/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial
checking for gcc... /opt/intel/16.0/bin/intel64/icc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /opt/intel/16.0/bin/intel64/icc accepts -g... yes
checking for /opt/intel/16.0/bin/intel64/icc option to accept ISO C89... none needed
checking whether we are using the GNU Fortran compiler... no
checking whether /opt/intel/16.0/bin/intel64/ifort accepts -g... yes
checking for ranlib... ranlib
checking how to get verbose linking output from /opt/intel/16.0/bin/intel64/ifort... -v
checking for Fortran libraries of /opt/intel/16.0/bin/intel64/ifort...  -L/projects/sems/install/toss3/sems/tpl/netcdf/4.4.1/intel/16.0.2/exo/lib -L/projects/sems/install/toss3/sems/tpl/hdf5/1.8.12/intel/16.0.2/base/lib -L/opt/intel/16.0/compiler/lib/intel64_lin -L/opt/rh/devtoolset-3/root/usr/lib/gcc/x86_64-redhat-linux/4.9.2/ -L/opt/rh/devtoolset-3/root/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64 -L/opt/rh/devtoolset-3/root/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/projects/sems/install/toss3/sems/tpl/netcdf/4.4.1/intel/16.0.2/exo/lib/ -L/projects/sems/install/toss3/sems/tpl/hdf5/1.8.12/intel/16.0.2/base/lib/ -L/opt/rh/devtoolset-3/root/usr/lib/gcc/x86_64-redhat-linux/4.9.2/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -ldl -lirc_s
checking for dummy main to link with Fortran libraries... none
checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore
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checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of long... 8
checking how to get the version output from /opt/intel/16.0/bin/intel64/ifort... -V
configure: creating ./config.status
config.status: creating Makefile.conf
config.status: creating config.h
Please check the Makefile.conf
Have a nice day!
[ 61%] Performing copy_mpi_serial_files step for 'mct_project'
[ 62%] Performing copy_makefiles step for 'mct_project'
[ 62%] Performing build step for 'mct_project'
/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/mpi.c(302): warning #266: function "MPI_Get_library_version" declared implicitly
    MPI_Get_library_version(version,resultlen);
    ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/mpi.c(329): warning #266: function "MPI_Get_Version" declared implicitly
    MPI_Get_Version(mpi_vers, mpi_subvers);
    ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/pack.c(43): warning #266: function "Type_extent" declared implicitly
    Type_extent(type, &extent);
    ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/pack.c(73): warning #266: function "Pack_size" declared implicitly
    ret = Pack_size(incount, type_ptr, comm_ptr, size);
          ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/pack.c(127): warning #266: function "Type_extent" declared implicitly
    Type_extent(type, &extent);
    ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(217): warning #266: function "Type_struct" declared implicitly
    return Type_struct(count, blocklens, displacements,
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(297): warning #266: function "Type_extent" declared implicitly
          Type_extent((Datatype) oldtypes_ptr[i], &extent);
          ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(310): warning #266: function "Copy_type" declared implicitly
            Copy_type( (typepair*) oldtypes_ptr[i]->pairs+k,
            ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(374): warning #266: function "Type_contiguous" declared implicitly
    return Type_contiguous(count, old_ptr, new_ptr);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(387): warning #266: function "Type_extent" declared implicitly
    Type_extent(oldtype, &extent);
    ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(416): warning #266: function "Type_vector" declared implicitly
    return Type_vector(count, blocklen, stride, old_ptr, new_ptr);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(426): warning #266: function "Type_extent" declared implicitly
    Type_extent(oldtype, &extent);
    ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(429): warning #266: function "Type_hvector" declared implicitly
    return Type_hvector(count, blocklen, bstride, oldtype, newtype);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(448): warning #266: function "Type_hvector" declared implicitly
    return Type_hvector(count, blocklen, stride, old_ptr, new_ptr);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(465): warning #266: function "Type_hvector" declared implicitly
    return Type_hvector(count, blocklen, stride, old_ptr, new_ptr);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(478): warning #266: function "Type_extent" declared implicitly
    Type_extent(oldtype, &extent);
    ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(506): warning #266: function "Type_indexed" declared implicitly
    return Type_indexed(count, blocklens, displacements, old_ptr, new_ptr);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(518): warning #266: function "Type_extent" declared implicitly
      Type_extent(oldtype, &extent);
      ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(522): warning #266: function "Type_hindexed" declared implicitly
    return Type_hindexed(count, blocklens, bdisps, oldtype, newtype);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(543): warning #266: function "Type_create_indexed_block" declared implicitly
    return Type_create_indexed_block(count, blocklen, displacements, old_ptr, new_ptr);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(575): warning #266: function "Type_hindexed" declared implicitly
    return Type_hindexed(count, blocklens, disps, old_ptr, new_ptr);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(608): warning #266: function "Copy_type" declared implicitly
      Copy_type((typepair*) oldtype->pairs + i,
      ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(632): warning #266: function "Type_size" declared implicitly
    return Type_size(type_ptr, size);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(657): warning #266: function "Type_lb" declared implicitly
    return Type_lb(type_ptr, lb);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(677): warning #266: function "Type_ub" declared implicitly
    return Type_ub(type_ptr, ub);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(691): warning #266: function "FGet_address" declared implicitly
    *ierr = FGet_address(loc, address);
            ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(697): warning #266: function "FGet_address" declared implicitly
    *ierr = FGet_address(loc, address);
            ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(708): warning #266: function "MPI_Get_address" declared implicitly
    return MPI_Get_address(loc, address);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/type.c(728): warning #266: function "Type_extent" declared implicitly
    return Type_extent(type_ptr, extent);
           ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/copy.c(67): warning #266: function "Type_extent" declared implicitly
    Type_extent(src_type, &src_extent);
    ^

/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mpi-serial/info.c(43): warning #266: function "MPI_Info_free" declared implicitly
    *ierror=MPI_Info_free(info);
            ^

mpi.o send.o recv.o collective.o req.o list.o handles.o comm.o error.o ic_merge.o group.o time.o pack.o type.o type_const.o copy.o op.o cart.o getcount.o probe.o info.o fort.o mpif.o
a - mpi.o
a - send.o
a - recv.o
a - collective.o
a - req.o
a - list.o
a - handles.o
a - comm.o
a - error.o
a - ic_merge.o
a - group.o
a - time.o
a - pack.o
a - type.o
a - type_const.o
a - copy.o
a - op.o
a - cart.o
a - getcount.o
a - probe.o
a - info.o
a - fort.o
a - mpif.o
/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mct/m_SpatialIntegralV.F90(716): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'.
		 write(stderr,'(3a,i8,a,e10.6)') myname_, &
-----------------------------------------^
/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mct/m_SpatialIntegralV.F90(959): remark #8291: Recommended relationship between field width 'W' and the number of fractional digits 'D' in this edit descriptor is 'W>=D+7'.
		 write(stderr,'(3a,i8,a,e10.6)') myname_, &
-----------------------------------------^
/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mct/m_Rearranger.F90(1104): remark #5140: Unrecognized directive
!DIR$ CONCURRENT
----------------^
/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mct/m_Rearranger.F90(1105): remark #5140: Unrecognized directive
!DIR$ PREFERVECTOR
------------------^
/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mct/m_Rearranger.F90(1116): remark #5140: Unrecognized directive
!DIR$ CONCURRENT
----------------^
/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/src/externals/mct/mct/m_Rearranger.F90(1117): remark #5140: Unrecognized directive
!DIR$ PREFERVECTOR
------------------^
[ 62%] Performing install step for 'mct_project'
[ 63%] Completed 'mct_project'
[ 63%] Built target mct_project
make: *** [all] Error 2
==================================================
Running make for __command_line_test__/__command_line_test__.
==================================================
ERROR: Command: 'make -j 8' failed with error 'None' from dir '/home/bhillma/codes/e3sm/branches/brhillman/cime/add-unit-tests-sems/cime/unit_tests.DHcacLSU/__command_line_test__/__command_line_test__'