From bea6b38af6d4647d37ef6b5f587bb7ac5fa763d9 Mon Sep 17 00:00:00 2001
From: Tatiana Gurbich <tgurbich@gmail.com>
Date: Thu, 25 Jul 2024 09:44:14 +0100
Subject: [PATCH] Removed changing collection date to lowercase as this was
 failing checks

---
 genomeuploader/genome_upload.py | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/genomeuploader/genome_upload.py b/genomeuploader/genome_upload.py
index 6818308..45357f8 100755
--- a/genomeuploader/genome_upload.py
+++ b/genomeuploader/genome_upload.py
@@ -428,8 +428,8 @@ def extract_ENA_info(genomeInfo, uploadDir, webin, password):
                         if not country in GEOGRAPHIC_LOCATIONS:
                             country = "not provided"
 
-                        collectionDate = sampleInfo["collection_date"].lower()
-                        if not collectionDate or collectionDate == "missing" or collectionDate in \
+                        collectionDate = sampleInfo["collection_date"]
+                        if not collectionDate or collectionDate.lower() == "missing" or collectionDate.lower() in \
                                 ["not applicable", "not available", "na"]:
                             collectionDate = "not provided"