gmake /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/Makefile -C /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2 CASEROOT=/data/taoliu/taoliufile/my_e3sm/E3SM/cime/scripts/t6 MODEL=pio2 USER_CMAKE_OPTS="-D GENF90_PATH=$CIMEROOT/src/externals/genf90 " PIO_LIBDIR=/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2 CASETOOLS=/data/taoliu/taoliufile/my_e3sm/E3SM/cime/scripts/t6/Tools PIO_VERSION=2 MPILIB=mpich SHAREDLIBROOT=/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio EXEROOT=/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld COMPILER=gnu BUILD_THREADED=False USER_CPPDEFS=-DTIMING IO_LIB_SRCROOT=/data/taoliu/taoliufile/my_e3sm/E3SM/externals IO_LIB_v1_SRCDIR=scorpio_classic IO_LIB_v2_SRCDIR=scorpio -f /data/taoliu/taoliufile/my_e3sm/E3SM/cime/scripts/t6/Tools/Makefile gmake: Entering directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' /data/taoliu/taoliufile/my_e3sm/E3SM/cime/scripts/t6/Tools/mkSrcfiles cp -f Filepath Deppath /data/taoliu/taoliufile/my_e3sm/E3SM/cime/scripts/t6/Tools/mkDepends Deppath Srcfiles > Depends cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2; \ CC=mpicc CXX=mpicxx FC=mpif90 LDFLAGS="" cmake -D CMAKE_Fortran_FLAGS:STRING="-mcmodel=medium -fconvert=big-endian -ffree-line-length-none -ffixed-line-length-none -fallow-argument-mismatch -fallow-invalid-boz -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include" -D CMAKE_C_FLAGS:STRING="-mcmodel=medium -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include" -D CMAKE_CXX_FLAGS:STRING="-mcmodel=medium -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include" -D CMAKE_VERBOSE_MAKEFILE:BOOL=ON -D GPTL_PATH:STRING=/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads -D PIO_ENABLE_TESTS:BOOL=OFF -D PIO_USE_MALLOC:BOOL=ON -D USER_CMAKE_MODULE_PATH:LIST="/data/taoliu/taoliufile/my_e3sm/E3SM/cime/src/CMake;/data/taoliu/taoliufile/my_e3sm/E3SM/cime/src/externals/pio2/cmake" -D NetCDF_C_PATH:PATH=/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34 -D NetCDF_Fortran_PATH:PATH=/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7 -D HDF5_PATH:STRING="/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/hdf5-1.12.2-cvv4srve5m7rupfic3ijexcgnnx4isgg" -D PnetCDF_PATH:STRING="/home/taoliu/CESM/Libs/pnetcdf-1.12.3" -D GENF90_PATH=/data/taoliu/taoliufile/my_e3sm/E3SM/cime/src/externals/genf90 /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio -- The C compiler identification is GNU 10.3.0 -- The CXX compiler identification is GNU 10.3.0 -- The Fortran compiler identification is GNU 10.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicxx - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpif90 - skipped -- Found MPI_C: /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc (found version "4.0") -- Found MPI_CXX: /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicxx (found version "4.0") -- Found MPI_Fortran: /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpif90 (found version "4.0") -- Found MPI: TRUE (found version "4.0") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of MPI_Offset -- Check size of MPI_Offset - done -- Found GPTL C: /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/lib/libgptl.a -- Found NetCDF_C: /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/lib/libnetcdf.so -- Checking NetCDF version -- Checking NetCDF version - 4.9.0./*!< -- Found NetCDF: /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/lib/libnetcdf.so (found suitable version "4.9.0./*!<", minimum required is "4.3.3") -- Checking whether NetCDF has parallel support -- Checking whether NetCDF has parallel support - yes -- Looking for nc_set_log_level -- Looking for nc_set_log_level - found -- Found PnetCDF_C: /home/taoliu/CESM/Libs/pnetcdf-1.12.3/lib/libpnetcdf.so -- Checking PnetCDF version -- Checking PnetCDF version - 1.12.3 -- Found PnetCDF: /home/taoliu/CESM/Libs/pnetcdf-1.12.3/lib/libpnetcdf.so (found suitable version "1.12.3", minimum required is "1.8.1") -- Looking for ncmpi_get_varn -- Looking for ncmpi_get_varn - found -- Check size of size_t -- Check size of size_t - done -- Check size of long long -- Check size of long long - done -- Checking whether Fortran compiler supports c_sizeof -- Checking whether Fortran compiler supports c_sizeof - yes -- MPIIO not detected and therefore disabled. -- Checking whether MPI Fortran module is supported -- Checking whether MPI Fortran module is supported - yes -- MPI Fortran module verified and enabled. -- Found GPTL Fortran Perf: /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/lib/libgptl.a -- Found NetCDF_Fortran: /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/lib/libnetcdff.so -- Found PnetCDF_Fortran: /home/taoliu/CESM/Libs/pnetcdf-1.12.3/lib/libpnetcdf.so -- Looking for ncmpi_get_varn -- Looking for ncmpi_get_varn - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done -- Generating done -- Build files have been written to: /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2 gmake: Leaving directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' cat: Filepath: No such file or directory cat: Srcfiles: No such file or directory %file_modules %file_includes @check_includes cc1: warning: command-line option ‘-fallow-argument-mismatch’ is valid for Fortran but not for C CMake Warning (dev) at /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (GPTL_C) does not match the name of the calling package (GPTL). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/LibFind.cmake:302 (find_package_handle_standard_args) cmake/FindGPTL.cmake:64 (find_package_component) src/CMakeLists.txt:20 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (GPTL_Fortran_Perf) does not match the name of the calling package (GPTL). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/LibFind.cmake:302 (find_package_handle_standard_args) cmake/FindGPTL.cmake:64 (find_package_component) src/CMakeLists.txt:21 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (NetCDF_C) does not match the name of the calling package (NetCDF). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/LibFind.cmake:302 (find_package_handle_standard_args) cmake/FindNetCDF.cmake:51 (find_package_component) src/clib/CMakeLists.txt:118 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (PnetCDF_C) does not match the name of the calling package (PnetCDF). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/LibFind.cmake:302 (find_package_handle_standard_args) cmake/FindPnetCDF.cmake:51 (find_package_component) src/clib/CMakeLists.txt:145 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (NetCDF_Fortran) does not match the name of the calling package (NetCDF). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/LibFind.cmake:302 (find_package_handle_standard_args) cmake/FindNetCDF.cmake:51 (find_package_component) src/flib/CMakeLists.txt:196 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (PnetCDF_Fortran) does not match the name of the calling package (PnetCDF). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/LibFind.cmake:302 (find_package_handle_standard_args) cmake/FindPnetCDF.cmake:51 (find_package_component) src/flib/CMakeLists.txt:216 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (NetCDF_C) does not match the name of the calling package (NetCDF). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/LibFind.cmake:302 (find_package_handle_standard_args) cmake/FindNetCDF.cmake:51 (find_package_component) tools/spio_finfo/CMakeLists.txt:54 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/share/cmake-3.24/Modules/FindPackageHandleStandardArgs.cmake:438 (message): The package name passed to `find_package_handle_standard_args` (PnetCDF_C) does not match the name of the calling package (PnetCDF). This can lead to problems in calling code that expects `find_package` result variables (e.g., `_FOUND`) to follow a certain pattern. Call Stack (most recent call first): cmake/LibFind.cmake:302 (find_package_handle_standard_args) cmake/FindPnetCDF.cmake:51 (find_package_component) tools/spio_finfo/CMakeLists.txt:74 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning: Manually-specified variables were not used by the project: HDF5_PATH gmake -j 8 /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/bin/cmake -S/data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio -B/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2 --check-build-system CMakeFiles/Makefile.cmake 0 /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/bin/cmake -E cmake_progress_start /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/CMakeFiles /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2//CMakeFiles/progress.marks gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' gmake -f src/clib/CMakeFiles/pioc.dir/build.make src/clib/CMakeFiles/pioc.dir/depend gmake -f src/flib/CMakeFiles/genf90.dir/build.make src/flib/CMakeFiles/genf90.dir/depend gmake[2]: Entering directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2 && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/bin/cmake -E cmake_depends "Unix Makefiles" /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/flib /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2 /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/flib /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/flib/CMakeFiles/genf90.dir/DependInfo.cmake --color= gmake[2]: Entering directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2 && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/cmake-3.24.3-re7idwdvagoxuw63n6mxlydsmjrvoq7v/bin/cmake -E cmake_depends "Unix Makefiles" /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2 /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib/CMakeFiles/pioc.dir/DependInfo.cmake --color= gmake[2]: Leaving directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' gmake -f src/flib/CMakeFiles/genf90.dir/build.make src/flib/CMakeFiles/genf90.dir/build gmake[2]: Leaving directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' gmake -f src/clib/CMakeFiles/pioc.dir/build.make src/clib/CMakeFiles/pioc.dir/build gmake[2]: Entering directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' gmake[2]: Nothing to be done for 'src/flib/CMakeFiles/genf90.dir/build'. gmake[2]: Leaving directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' gmake[2]: Entering directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' [ 0%] Built target genf90 [ 2%] Building C object src/clib/CMakeFiles/pioc.dir/topology.c.o [ 4%] Building C object src/clib/CMakeFiles/pioc.dir/pio_mpi_timer.c.o cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc -DCPRGNU -DLINUX -DLOGGING -DMPICH_SKIP_MPICXX -DNETCDF_C_LOGGING_ENABLED -DOMPI_SKIP_MPICXX -DTIMING -DUSE_MPI_ISEND_FOR_FC -DUSE_PNETCDF_VARN -DUSE_PNETCDF_VARN_ON_READ -I/data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib -I/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib -mcmodel=medium -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -std=c99 -MD -MT src/clib/CMakeFiles/pioc.dir/topology.c.o -MF CMakeFiles/pioc.dir/topology.c.o.d -o CMakeFiles/pioc.dir/topology.c.o -c /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/topology.c [ 6%] Building C object src/clib/CMakeFiles/pioc.dir/pio_timer.c.o [ 8%] Building C object src/clib/CMakeFiles/pioc.dir/pio_file.c.o [ 10%] Building C object src/clib/CMakeFiles/pioc.dir/pioc_support.c.o cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc -DCPRGNU -DLINUX -DLOGGING -DMPICH_SKIP_MPICXX -DNETCDF_C_LOGGING_ENABLED -DOMPI_SKIP_MPICXX -DTIMING -DUSE_MPI_ISEND_FOR_FC -DUSE_PNETCDF_VARN -DUSE_PNETCDF_VARN_ON_READ -I/data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib -I/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib -mcmodel=medium -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -std=c99 -MD -MT src/clib/CMakeFiles/pioc.dir/pio_mpi_timer.c.o -MF CMakeFiles/pioc.dir/pio_mpi_timer.c.o.d -o CMakeFiles/pioc.dir/pio_mpi_timer.c.o -c /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_mpi_timer.c [ 14%] Building C object src/clib/CMakeFiles/pioc.dir/pio_lists.c.o [ 14%] Building C object src/clib/CMakeFiles/pioc.dir/pio_print.c.o cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc -DCPRGNU -DLINUX -DLOGGING -DMPICH_SKIP_MPICXX -DNETCDF_C_LOGGING_ENABLED -DOMPI_SKIP_MPICXX -DTIMING -DUSE_MPI_ISEND_FOR_FC -DUSE_PNETCDF_VARN -DUSE_PNETCDF_VARN_ON_READ -I/data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib -I/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib -mcmodel=medium -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -std=c99 -MD -MT src/clib/CMakeFiles/pioc.dir/pio_timer.c.o -MF CMakeFiles/pioc.dir/pio_timer.c.o.d -o CMakeFiles/pioc.dir/pio_timer.c.o -c /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc -DCPRGNU -DLINUX -DLOGGING -DMPICH_SKIP_MPICXX -DNETCDF_C_LOGGING_ENABLED -DOMPI_SKIP_MPICXX -DTIMING -DUSE_MPI_ISEND_FOR_FC -DUSE_PNETCDF_VARN -DUSE_PNETCDF_VARN_ON_READ -I/data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib -I/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib -mcmodel=medium -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -std=c99 -MD -MT src/clib/CMakeFiles/pioc.dir/pio_file.c.o -MF CMakeFiles/pioc.dir/pio_file.c.o.d -o CMakeFiles/pioc.dir/pio_file.c.o -c /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_file.c cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc -DCPRGNU -DLINUX -DLOGGING -DMPICH_SKIP_MPICXX -DNETCDF_C_LOGGING_ENABLED -DOMPI_SKIP_MPICXX -DTIMING -DUSE_MPI_ISEND_FOR_FC -DUSE_PNETCDF_VARN -DUSE_PNETCDF_VARN_ON_READ -I/data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib -I/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib -mcmodel=medium -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -std=c99 -MD -MT src/clib/CMakeFiles/pioc.dir/pioc_support.c.o -MF CMakeFiles/pioc.dir/pioc_support.c.o.d -o CMakeFiles/pioc.dir/pioc_support.c.o -c /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc -DCPRGNU -DLINUX -DLOGGING -DMPICH_SKIP_MPICXX 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-I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -std=c99 -MD -MT src/clib/CMakeFiles/pioc.dir/pio_print.c.o -MF CMakeFiles/pioc.dir/pio_print.c.o.d -o CMakeFiles/pioc.dir/pio_print.c.o -c /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_print.c [ 16%] Building C object src/clib/CMakeFiles/pioc.dir/pioc.c.o cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc -DCPRGNU -DLINUX -DLOGGING -DMPICH_SKIP_MPICXX -DNETCDF_C_LOGGING_ENABLED -DOMPI_SKIP_MPICXX -DTIMING -DUSE_MPI_ISEND_FOR_FC -DUSE_PNETCDF_VARN -DUSE_PNETCDF_VARN_ON_READ -I/data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib -I/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib -mcmodel=medium -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -std=c99 -MD -MT src/clib/CMakeFiles/pioc.dir/pioc.c.o -MF CMakeFiles/pioc.dir/pioc.c.o.d -o CMakeFiles/pioc.dir/pioc.c.o -c /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c [ 18%] Building C object src/clib/CMakeFiles/pioc.dir/pioc_sc.c.o cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc -DCPRGNU -DLINUX -DLOGGING -DMPICH_SKIP_MPICXX -DNETCDF_C_LOGGING_ENABLED -DOMPI_SKIP_MPICXX -DTIMING -DUSE_MPI_ISEND_FOR_FC -DUSE_PNETCDF_VARN -DUSE_PNETCDF_VARN_ON_READ -I/data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib -I/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib -mcmodel=medium -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -std=c99 -MD -MT src/clib/CMakeFiles/pioc.dir/pioc_sc.c.o -MF CMakeFiles/pioc.dir/pioc_sc.c.o.d -o CMakeFiles/pioc.dir/pioc_sc.c.o -c /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_sc.c [ 20%] Building C object src/clib/CMakeFiles/pioc.dir/pio_spmd.c.o src/clib/CMakeFiles/pioc.dir/build.make:134: recipe for target 'src/clib/CMakeFiles/pioc.dir/pioc_support.c.o' failed cd /data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib && /home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/mpich-4.0.2-45izi6ye4urznu7cundnfjjtx3bxqph6/bin/mpicc -DCPRGNU -DLINUX -DLOGGING -DMPICH_SKIP_MPICXX -DNETCDF_C_LOGGING_ENABLED -DOMPI_SKIP_MPICXX -DTIMING -DUSE_MPI_ISEND_FOR_FC -DUSE_PNETCDF_VARN -DUSE_PNETCDF_VARN_ON_READ -I/data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib -I/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2/src/clib -mcmodel=medium -O -DTIMING -DLINUX -DNDEBUG -DHAVE_MPI -DFORTRANUNDERSCORE -DNO_R16 -DCPRGNU -DHAVE_SLASHPROC -DUSE_MPI_ISEND_FOR_FC -I. -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/mct/noesmf/c1a1l1i1o1r1g1w1e1/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-c-4.9.0-w4gs6bmn3vyblnwgxirvyrd4os34of34/include -I/home/taoliu/spack/opt/spack/linux-ubuntu18.04-zen2/gcc-10.3.0/netcdf-fortran-4.6.0-lv6t2oltzqhgc3tar3xkcswt42yhmfs7/include -I/home/taoliu/CESM/Libs/pnetcdf-1.12.3/include -I/data/taoliu/taoliufile/my_e3sm/myoutput//t6/bld/gnu/mpich/nodebug/nothreads/include -std=c99 -MD -MT src/clib/CMakeFiles/pioc.dir/pio_spmd.c.o -MF CMakeFiles/pioc.dir/pio_spmd.c.o.d -o CMakeFiles/pioc.dir/pio_spmd.c.o -c /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_spmd.c src/clib/CMakeFiles/pioc.dir/build.make:176: recipe for target 'src/clib/CMakeFiles/pioc.dir/pioc.c.o' failed gmake[2]: Leaving directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' CMakeFiles/Makefile2:185: recipe for target 'src/clib/CMakeFiles/pioc.dir/all' failed gmake[1]: Leaving directory '/data/taoliu/taoliufile/my_e3sm/myoutput/t6/bld/gnu/mpich/nodebug/nothreads/pio/pio2' Makefile:138: recipe for target 'all' failed /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1083:5: error: conflicting types for ‘PIOc_readmap’ 1083 | int PIOc_readmap(const char *file, int *ndims, int **gdims, PIO_Offset *fmaplen, | ^~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1038:9: note: previous declaration of ‘PIOc_readmap’ was here 1038 | int PIOc_readmap(const char *file, int *ndims, int **gdims, PIO_Offset *fmaplen, | ^~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1227:5: error: conflicting types for ‘PIOc_readmap_from_f90’ 1227 | int PIOc_readmap_from_f90(const char *file, int *ndims, int **gdims, PIO_Offset *maplen, | ^~~~~~~~~~~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1040:9: note: previous declaration of ‘PIOc_readmap_from_f90’ was here 1040 | int PIOc_readmap_from_f90(const char *file,int *ndims, int **gdims, PIO_Offset *maplen, | ^~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c: In function ‘PIOc_read_nc_decomp’: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1435:31: warning: passing argument 6 of ‘PIOc_InitDecomp’ from incompatible pointer type [-Wincompatible-pointer-types] 1435 | compmap, ioidp, NULL, NULL, NULL); | ^~~~~~~ | | | long long int * In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1025:43: note: expected ‘const MPI_Offset *’ {aka ‘const long int *’} but argument is of type ‘long long int *’ 1025 | const PIO_Offset *compmap, int *ioidp, const int *rearr, | ~~~~~~~~~~~~~~~~~~^~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c: In function ‘pioc_read_nc_decomp_int’: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1865:52: warning: passing argument 4 of ‘PIOc_inq_dim’ from incompatible pointer type [-Wincompatible-pointer-types] 1865 | if ((ret = PIOc_inq_dim(ncid, dim_dimid, NULL, &ndims_in))) | ^~~~~~~~~ | | | long long int * In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1130:67: note: expected ‘MPI_Offset *’ {aka ‘long int *’} but argument is of type ‘long long int *’ 1130 | int PIOc_inq_dim(int ncid, int dimid, char *name, PIO_Offset *lenp); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1907:53: warning: passing argument 4 of ‘PIOc_inq_dim’ from incompatible pointer type [-Wincompatible-pointer-types] 1907 | if ((ret = PIOc_inq_dim(ncid, task_dimid, NULL, &num_tasks_in))) | ^~~~~~~~~~~~~ | | | long long int * In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1130:67: note: expected ‘MPI_Offset *’ {aka ‘long int *’} but argument is of type ‘long long int *’ 1130 | int PIOc_inq_dim(int ncid, int dimid, char *name, PIO_Offset *lenp); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c: At top level: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:2018:5: error: conflicting types for ‘PIOc_writemap’ 2018 | int PIOc_writemap(const char *file, int ioid, int ndims, const int *gdims, PIO_Offset maplen, | ^~~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1042:9: note: previous declaration of ‘PIOc_writemap’ was here 1042 | int PIOc_writemap(const char *file, int ioid, int ndims, const int *gdims, PIO_Offset maplen, | ^~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:2145:5: error: conflicting types for ‘PIOc_writemap_from_f90’ 2145 | int PIOc_writemap_from_f90(const char *file, int ioid, int ndims, const int *gdims, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1044:9: note: previous declaration of ‘PIOc_writemap_from_f90’ was here 1044 | int PIOc_writemap_from_f90(const char *file, int ioid, int ndims, const int *gdims, | ^~~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:525:5: error: conflicting types for ‘PIOc_InitDecomp’ 525 | int PIOc_InitDecomp(int iosysid, int pio_type, int ndims, const int *gdimlen, int maplen, | ^~~~~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1024:9: note: previous declaration of ‘PIOc_InitDecomp’ was here 1024 | int PIOc_InitDecomp(int iosysid, int pio_type, int ndims, const int *gdimlen, int maplen, | ^~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c: In function ‘PIOc_InitDecomp’: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:689:79: warning: passing argument 6 of ‘CalcStartandCount’ from incompatible pointer type [-Wincompatible-pointer-types] 689 | ios->io_rank, iodesc->firstregion->start, | ~~~~~~~~~~~~~~~~~~~^~~~~~~ | | | MPI_Offset * {aka long int *} In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:12: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_internal.h:197:53: note: expected ‘long long int *’ but argument is of type ‘MPI_Offset *’ {aka ‘long int *’} 197 | int myiorank, PIO_Offset *start, PIO_Offset *count, int *num_aiotasks); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:690:65: warning: passing argument 7 of ‘CalcStartandCount’ from incompatible pointer type [-Wincompatible-pointer-types] 690 | iodesc->firstregion->count, &iodesc->num_aiotasks))) | ~~~~~~~~~~~~~~~~~~~^~~~~~~ | | | MPI_Offset * {aka long int *} In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:12: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_internal.h:197:72: note: expected ‘long long int *’ but argument is of type ‘MPI_Offset *’ {aka ‘long int *’} 197 | int myiorank, PIO_Offset *start, PIO_Offset *count, int *num_aiotasks); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c: At top level: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:840:5: error: conflicting types for ‘PIOc_init_decomp’ 840 | int PIOc_init_decomp(int iosysid, int pio_type, int ndims, const int *gdimlen, int maplen, | ^~~~~~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1031:9: note: previous declaration of ‘PIOc_init_decomp’ was here 1031 | int PIOc_init_decomp(int iosysid, int pio_type, int ndims, const int *gdimlen, int maplen, | ^~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c: In function ‘calc_var_rec_sz’: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:3627:49: warning: passing argument 4 of ‘PIOc_inq_type’ from incompatible pointer type [-Wincompatible-pointer-types] 3627 | ierr = PIOc_inq_type(ncid, vtype, NULL, &vtype_sz); | ^~~~~~~~~ | | | long long int * In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1113:72: note: expected ‘MPI_Offset *’ {aka ‘long int *’} but argument is of type ‘long long int *’ 1113 | int PIOc_inq_type(int ncid, nc_type xtype, char *name, PIO_Offset *sizep); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:3661:60: warning: passing argument 4 of ‘PIOc_inq_dim’ from incompatible pointer type [-Wincompatible-pointer-types] 3661 | ierr = PIOc_inq_dim(ncid, dimids[i], NULL, &(dimlen[i])); | ^~~~~~~~~~~~ | | | long long int * In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1130:67: note: expected ‘MPI_Offset *’ {aka ‘long int *’} but argument is of type ‘long long int *’ 1130 | int PIOc_inq_dim(int ncid, int dimid, char *name, PIO_Offset *lenp); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c: In function ‘mtimer_stop’: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c:157:51: warning: ‘ time=’ directive output may be truncated writing 6 bytes into a region of size between 0 and 255 [-Wformat-truncation=] 157 | snprintf(tmp_log_msg, PIO_MAX_NAME, "%s %s time=%11.8f s", mt->name, (log_msg)?(log_msg):"", mt->total_time); | ^~~~~~ In file included from /usr/include/stdio.h:862, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:12, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_internal.h:13, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.h:7, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c:2: /usr/include/x86_64-linux-gnu/bits/stdio2.h:64:10: note: ‘__builtin___snprintf_chk’ output between 21 and 584 bytes into a destination of size 256 64 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c: In function ‘PIOc_readmap’: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1117:9: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1117 | fscanf(fp,"%s%d%s%d%s%d\n",rversstr, &rversno, rnpesstr, &rnpes, rndimsstr, ndims); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1141:13: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1141 | fscanf(fp,"%d ", tdims + i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1148:13: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1148 | fscanf(fp, "%d %lld", &j, &maplen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1160:17: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1160 | fscanf(fp, "%lld ", tmap+j); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: *** [src/clib/CMakeFiles/pioc.dir/pioc_support.c.o] Error 1 gmake[2]: *** Waiting for unfinished jobs.... gmake[2]: *** [src/clib/CMakeFiles/pioc.dir/pioc.c.o] Error 1 /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c: In function ‘mtimer_flush’: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c:387:51: warning: ‘ time=’ directive output may be truncated writing 6 bytes into a region of size between 0 and 255 [-Wformat-truncation=] 387 | snprintf(tmp_log_msg, PIO_MAX_NAME, "%s %s time=%11.8f s", mt->name, (log_msg)?(log_msg):"", mt->total_time); | ^~~~~~ In file included from /usr/include/stdio.h:862, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:12, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_internal.h:13, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.h:7, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c:2: /usr/include/x86_64-linux-gnu/bits/stdio2.h:64:10: note: ‘__builtin___snprintf_chk’ output between 21 and 584 bytes into a destination of size 256 64 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[1]: *** [src/clib/CMakeFiles/pioc.dir/all] Error 2 gmake: *** [all] Error 2 ERROR: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1083:5: error: conflicting types for PIOc_readmap 1083 | int PIOc_readmap(const char *file, int *ndims, int **gdims, PIO_Offset *fmaplen, | ^~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1038:9: note: previous declaration of PIOc_readmap was here 1038 | int PIOc_readmap(const char *file, int *ndims, int **gdims, PIO_Offset *fmaplen, | ^~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1227:5: error: conflicting types for PIOc_readmap_from_f90 1227 | int PIOc_readmap_from_f90(const char *file, int *ndims, int **gdims, PIO_Offset *maplen, | ^~~~~~~~~~~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1040:9: note: previous declaration of PIOc_readmap_from_f90 was here 1040 | int PIOc_readmap_from_f90(const char *file,int *ndims, int **gdims, PIO_Offset *maplen, | ^~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c: In function PIOc_read_nc_decomp : /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1435:31: warning: passing argument 6 of PIOc_InitDecomp from incompatible pointer type [-Wincompatible-pointer-types] 1435 | compmap, ioidp, NULL, NULL, NULL); | ^~~~~~~ | | | long long int * In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1025:43: note: expected const MPI_Offset * {aka const long int * } but argument is of type long long int * 1025 | const PIO_Offset *compmap, int *ioidp, const int *rearr, | ~~~~~~~~~~~~~~~~~~^~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c: In function pioc_read_nc_decomp_int : /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1865:52: warning: passing argument 4 of PIOc_inq_dim from incompatible pointer type [-Wincompatible-pointer-types] 1865 | if ((ret = PIOc_inq_dim(ncid, dim_dimid, NULL, &ndims_in))) | ^~~~~~~~~ | | | long long int * In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1130:67: note: expected MPI_Offset * {aka long int * } but argument is of type long long int * 1130 | int PIOc_inq_dim(int ncid, int dimid, char *name, PIO_Offset *lenp); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1907:53: warning: passing argument 4 of PIOc_inq_dim from incompatible pointer type [-Wincompatible-pointer-types] 1907 | if ((ret = PIOc_inq_dim(ncid, task_dimid, NULL, &num_tasks_in))) | ^~~~~~~~~~~~~ | | | long long int * In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1130:67: note: expected MPI_Offset * {aka long int * } but argument is of type long long int * 1130 | int PIOc_inq_dim(int ncid, int dimid, char *name, PIO_Offset *lenp); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c: At top level: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:2018:5: error: conflicting types for PIOc_writemap 2018 | int PIOc_writemap(const char *file, int ioid, int ndims, const int *gdims, PIO_Offset maplen, | ^~~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1042:9: note: previous declaration of PIOc_writemap was here 1042 | int PIOc_writemap(const char *file, int ioid, int ndims, const int *gdims, PIO_Offset maplen, | ^~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:2145:5: error: conflicting types for PIOc_writemap_from_f90 2145 | int PIOc_writemap_from_f90(const char *file, int ioid, int ndims, const int *gdims, | ^~~~~~~~~~~~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1044:9: note: previous declaration of PIOc_writemap_from_f90 was here 1044 | int PIOc_writemap_from_f90(const char *file, int ioid, int ndims, const int *gdims, | ^~~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:525:5: error: conflicting types for PIOc_InitDecomp 525 | int PIOc_InitDecomp(int iosysid, int pio_type, int ndims, const int *gdimlen, int maplen, | ^~~~~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1024:9: note: previous declaration of PIOc_InitDecomp was here 1024 | int PIOc_InitDecomp(int iosysid, int pio_type, int ndims, const int *gdimlen, int maplen, | ^~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c: In function PIOc_InitDecomp : /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:689:79: warning: passing argument 6 of CalcStartandCount from incompatible pointer type [-Wincompatible-pointer-types] 689 | ios->io_rank, iodesc->firstregion->start, | ~~~~~~~~~~~~~~~~~~~^~~~~~~ | | | MPI_Offset * {aka long int *} In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:12: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_internal.h:197:53: note: expected long long int * but argument is of type MPI_Offset * {aka long int * } 197 | int myiorank, PIO_Offset *start, PIO_Offset *count, int *num_aiotasks); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:690:65: warning: passing argument 7 of CalcStartandCount from incompatible pointer type [-Wincompatible-pointer-types] 690 | iodesc->firstregion->count, &iodesc->num_aiotasks))) | ~~~~~~~~~~~~~~~~~~~^~~~~~~ | | | MPI_Offset * {aka long int *} In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:12: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_internal.h:197:72: note: expected long long int * but argument is of type MPI_Offset * {aka long int * } 197 | int myiorank, PIO_Offset *start, PIO_Offset *count, int *num_aiotasks); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c: At top level: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:840:5: error: conflicting types for PIOc_init_decomp 840 | int PIOc_init_decomp(int iosysid, int pio_type, int ndims, const int *gdimlen, int maplen, | ^~~~~~~~~~~~~~~~ In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1031:9: note: previous declaration of PIOc_init_decomp was here 1031 | int PIOc_init_decomp(int iosysid, int pio_type, int ndims, const int *gdimlen, int maplen, | ^~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c: In function calc_var_rec_sz : /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:3627:49: warning: passing argument 4 of PIOc_inq_type from incompatible pointer type [-Wincompatible-pointer-types] 3627 | ierr = PIOc_inq_type(ncid, vtype, NULL, &vtype_sz); | ^~~~~~~~~ | | | long long int * In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1113:72: note: expected MPI_Offset * {aka long int * } but argument is of type long long int * 1113 | int PIOc_inq_type(int ncid, nc_type xtype, char *name, PIO_Offset *sizep); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:3661:60: warning: passing argument 4 of PIOc_inq_dim from incompatible pointer type [-Wincompatible-pointer-types] 3661 | ierr = PIOc_inq_dim(ncid, dimids[i], NULL, &(dimlen[i])); | ^~~~~~~~~~~~ | | | long long int * In file included from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:11: /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:1130:67: note: expected MPI_Offset * {aka long int * } but argument is of type long long int * 1130 | int PIOc_inq_dim(int ncid, int dimid, char *name, PIO_Offset *lenp); | ^ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c: In function mtimer_stop : /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c:157:51: warning: time= directive output may be truncated writing 6 bytes into a region of size between 0 and 255 [-Wformat-truncation=] 157 | snprintf(tmp_log_msg, PIO_MAX_NAME, "%s %s time=%11.8f s", mt->name, (log_msg)?(log_msg):"", mt->total_time); | ^~~~~~ In file included from /usr/include/stdio.h:862, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:12, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_internal.h:13, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.h:7, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c:2: /usr/include/x86_64-linux-gnu/bits/stdio2.h:64:10: note: __builtin___snprintf_chk output between 21 and 584 bytes into a destination of size 256 64 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c: In function PIOc_readmap : /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1117:9: warning: ignoring return value of fscanf declared with attribute warn_unused_result [-Wunused-result] 1117 | fscanf(fp,"%s%d%s%d%s%d\n",rversstr, &rversno, rnpesstr, &rnpes, rndimsstr, ndims); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1141:13: warning: ignoring return value of fscanf declared with attribute warn_unused_result [-Wunused-result] 1141 | fscanf(fp,"%d ", tdims + i); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1148:13: warning: ignoring return value of fscanf declared with attribute warn_unused_result [-Wunused-result] 1148 | fscanf(fp, "%d %lld", &j, &maplen); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pioc_support.c:1160:17: warning: ignoring return value of fscanf declared with attribute warn_unused_result [-Wunused-result] 1160 | fscanf(fp, "%lld ", tmap+j); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[2]: *** [src/clib/CMakeFiles/pioc.dir/pioc_support.c.o] Error 1 gmake[2]: *** Waiting for unfinished jobs.... gmake[2]: *** [src/clib/CMakeFiles/pioc.dir/pioc.c.o] Error 1 /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c: In function mtimer_flush : /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c:387:51: warning: time= directive output may be truncated writing 6 bytes into a region of size between 0 and 255 [-Wformat-truncation=] 387 | snprintf(tmp_log_msg, PIO_MAX_NAME, "%s %s time=%11.8f s", mt->name, (log_msg)?(log_msg):"", mt->total_time); | ^~~~~~ In file included from /usr/include/stdio.h:862, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio.h:12, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_internal.h:13, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.h:7, from /data/taoliu/taoliufile/my_e3sm/E3SM/externals/scorpio/src/clib/pio_timer.c:2: /usr/include/x86_64-linux-gnu/bits/stdio2.h:64:10: note: __builtin___snprintf_chk output between 21 and 584 bytes into a destination of size 256 64 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gmake[1]: *** [src/clib/CMakeFiles/pioc.dir/all] Error 2 gmake: *** [all] Error 2