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new ftp server for kraken2-build? #682

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rob26220 opened this issue Feb 3, 2023 · 1 comment
Open

new ftp server for kraken2-build? #682

rob26220 opened this issue Feb 3, 2023 · 1 comment

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@rob26220
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rob26220 commented Feb 3, 2023

Dear Derrick,
Thanks for your work on this tool.
I cannot build any database from those retrived at the monagash site
The command and the messare are the following:

sudo kraken2-build --standard --db ncbi_r88_human17k_kraken2_32gb
Password:
Downloading nucleotide gb accession to taxon map... done.
Downloading nucleotide wgs accession to taxon map... done.
Downloaded accession to taxon map(s)
Downloading taxonomy tree data... done.
Uncompressing taxonomy data... done.
Untarring taxonomy tree data... done.
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/762/265/GCF_000762265.1_ASM76226v1

Thanks in advance for your help in this issue
Roberto

@HarryHung
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Refer to this for a fix
#292 (comment)

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