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Cannot download bacteria database #510

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MarFog opened this issue Oct 8, 2021 · 2 comments
Open

Cannot download bacteria database #510

MarFog opened this issue Oct 8, 2021 · 2 comments
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download issue kraken2-build --download-library issue

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@MarFog
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MarFog commented Oct 8, 2021

Hi,

I have a problem with

kraken2-build --download-library bacteria --db /home/pracownik/KRAKEN_DB/Bacteria

command. I am getting an error:

rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/128/725/GCF_900128725.1_BCifornacula_v1.0

I looked up for solution and I tried both options from #226
but unfortunately none of these worked for me. In the end I also replaced file rsync_from_ncbi.pl for the new one from github, but I am still getting this error. How can I fix that problem?

Cheers,
Marta

@lynngao
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lynngao commented Oct 8, 2021

#508

@MarFog
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MarFog commented Oct 11, 2021

Thank you very much for your help :)

@jenniferlu717 jenniferlu717 added the download issue kraken2-build --download-library issue label Mar 14, 2022
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