DataDrivenEnzymeRateEquations
Documentation for DataDrivenEnzymeRateEquations.
DataDrivenEnzymeRateEquations.calculate_all_parameter_removal_codesDataDrivenEnzymeRateEquations.fit_rate_equationDataDrivenEnzymeRateEquations.forward_selection_next_param_removal_codesDataDrivenEnzymeRateEquations.loss_rate_equationDataDrivenEnzymeRateEquations.param_rescalingDataDrivenEnzymeRateEquations.param_subset_selectDataDrivenEnzymeRateEquations.reverse_selection_next_param_removal_codesDataDrivenEnzymeRateEquations.test_rate_equation
DataDrivenEnzymeRateEquations.calculate_all_parameter_removal_codes — MethodGenerate all possibles codes for ways that mirror params for a and i states of MWC enzyme can be removed from the rate equation
DataDrivenEnzymeRateEquations.fit_rate_equation — Methodfit_rate_equation(
+Home · DataDrivenEnzymeRateEquations.jl DataDrivenEnzymeRateEquations
Documentation for DataDrivenEnzymeRateEquations.
DataDrivenEnzymeRateEquations.calculate_all_parameter_removal_codesDataDrivenEnzymeRateEquations.fit_rate_equationDataDrivenEnzymeRateEquations.forward_selection_next_param_removal_codesDataDrivenEnzymeRateEquations.loss_rate_equationDataDrivenEnzymeRateEquations.param_rescalingDataDrivenEnzymeRateEquations.param_subset_selectDataDrivenEnzymeRateEquations.reverse_selection_next_param_removal_codesDataDrivenEnzymeRateEquations.test_rate_equation
DataDrivenEnzymeRateEquations.calculate_all_parameter_removal_codes — MethodGenerate all possibles codes for ways that mirror params for a and i states of MWC enzyme can be removed from the rate equation
sourceDataDrivenEnzymeRateEquations.fit_rate_equation — Methodfit_rate_equation(
rate_equation::Function,
data::DataFrame,
metab_names::Tuple,
@@ -11,4 +11,4 @@
source = ["Figure 1", "Figure 1", "Figure 2"]
)
rate_equation(metabs, params) = params.Vmax * metabs.S / (1 + metabs.S / params.K_S)
-fit_rate_equation(rate_equation, data, (:A,), (:Vmax, :K_S))
sourceDataDrivenEnzymeRateEquations.forward_selection_next_param_removal_codes — MethodCalculate nt_param_removal_codes with num_params including non-zero term combinations for codes (excluding alpha terms) in each previous_param_removal_codes that has num_params-1
sourceDataDrivenEnzymeRateEquations.loss_rate_equation — MethodLoss function used for fitting that calculate log of ratio of rate equation predicting of rate and rate data
sourceDataDrivenEnzymeRateEquations.param_rescaling — MethodRescaling of fitting parameters from [0, 10] scale that optimizer uses to actual values
sourceDataDrivenEnzymeRateEquations.param_subset_select — MethodFunction to convert parameter vector to vector where some params are equal to 0, Inf or each other based on ntparamremoval_code
sourceDataDrivenEnzymeRateEquations.reverse_selection_next_param_removal_codes — MethodCalculate param_removal_codes with num_params including zero term combinations for codes (excluding alpha terms) in each previous_param_removal_codes that has num_params+1
sourceDataDrivenEnzymeRateEquations.test_rate_equation — MethodFunction to calculate loss for a given rate_equation and nt_fitted_params on data that was not used for training
sourceSettings
This document was generated with Documenter.jl version 1.2.1 on Wednesday 28 February 2024. Using Julia version 1.10.1.
DataDrivenEnzymeRateEquations.forward_selection_next_param_removal_codes — MethodCalculate nt_param_removal_codes with num_params including non-zero term combinations for codes (excluding alpha terms) in each previous_param_removal_codes that has num_params-1
DataDrivenEnzymeRateEquations.loss_rate_equation — MethodLoss function used for fitting that calculate log of ratio of rate equation predicting of rate and rate data
DataDrivenEnzymeRateEquations.param_rescaling — MethodRescaling of fitting parameters from [0, 10] scale that optimizer uses to actual values
DataDrivenEnzymeRateEquations.param_subset_select — MethodFunction to convert parameter vector to vector where some params are equal to 0, Inf or each other based on ntparamremoval_code
DataDrivenEnzymeRateEquations.reverse_selection_next_param_removal_codes — MethodCalculate param_removal_codes with num_params including zero term combinations for codes (excluding alpha terms) in each previous_param_removal_codes that has num_params+1
DataDrivenEnzymeRateEquations.test_rate_equation — MethodFunction to calculate loss for a given rate_equation and nt_fitted_params on data that was not used for training