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# Sphinx build info version 1 | ||
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. | ||
config: d668ec34cc48c7570a30fdb4e6373d49 | ||
tags: 645f666f9bcd5a90fca523b33c5a78b7 |
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# API reference | ||
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## Data | ||
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```{eval-rst} | ||
.. automodule:: src.data | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
``` | ||
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## Models | ||
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```{eval-rst} | ||
.. automodule:: src.model | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
``` | ||
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## Config | ||
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```{eval-rst} | ||
.. automodule:: src.config | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
``` | ||
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## Utils | ||
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```{eval-rst} | ||
.. automodule:: src.utils | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
``` |
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Welcome to the documentation of the OSIS Reproducability Python Template! | ||
=============================================================== | ||
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.. toctree:: | ||
:maxdepth: 2 | ||
:caption: Contents: | ||
:glob: | ||
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source/* | ||
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|Latest Version| |Python 3.10+| |Documentation| |Code Style Black| | ||
|codecov| |License| |GitHub| | ||
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This Project contains an example python package for the Advanced | ||
Reproducibility Workshop (OSIS). | ||
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Introduction | ||
------------ | ||
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Hi there! Here is the right place for a brief introduction to the | ||
project. The Documentation is available | ||
`here <https://datascience-lmu.github.io/osis_python_repro/>`__. | ||
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The random project logo was created with Stable Diffusion 2 (Rombach | ||
et al., 2022). | ||
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Installation | ||
------------ | ||
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- Setup a virtual environment with ``python -m venv venv`` | ||
- Activate the virtual environment with ``source venv/bin/activate`` | ||
- Install the project with poetry ``poetry install`` (Have poetry | ||
installed) | ||
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Usage | ||
----- | ||
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Populate this section with instructions on how to use the project. | ||
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Development Setup | ||
----------------- | ||
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- Install pre-commit hooks with ``pre-commit install`` | ||
- Run tests with ``unittest`` with | ||
``python -m unittest discover -s tests`` | ||
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Contribution Guidelines | ||
----------------------- | ||
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Populate this section with guidelines on how to contribute to the | ||
project. | ||
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Citation | ||
-------- | ||
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If you use this project, please cite it as follows: | ||
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:: | ||
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@misc{osisPyRepr2024, | ||
author = {Emanuel Sommer and Tobias Weber and Lisa Wimmer}, | ||
title = {Advanced Reproducibility Workshop - Python Package Template}, | ||
year = {2024}, | ||
} | ||
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License | ||
------- | ||
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This project is licensed under the MIT License - see the | ||
`LICENSE <LICENSE>`__ file for details. | ||
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.. |Latest Version| image:: https://img.shields.io/badge/version-0.1.0-g | ||
.. |Python 3.10+| image:: https://img.shields.io/badge/python-3.10%2C%203.11%2C%203.12-blue?logo=python | ||
.. |Documentation| image:: https://img.shields.io/badge/documentation-view-blue?logo=read-the-docs | ||
:target: https://datascience-lmu.github.io/osis_python_repro/ | ||
.. |Code Style Black| image:: https://img.shields.io/badge/code%20style-black-black | ||
.. |codecov| image:: https://codecov.io/gh/DataScience-LMU/osis_python_repro/graph/badge.svg?token=DTLY6DO9OG | ||
:target: https://codecov.io/gh/DataScience-LMU/osis_python_repro | ||
.. |License| image:: https://img.shields.io/badge/license-MIT-green | ||
:target: LICENSE | ||
.. |GitHub| image:: https://img.shields.io/badge/GitHub-View%20on%20GitHub-lightgrey?logo=github | ||
:target: https://github.com/DataScience-LMU/osis_python_repro |
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src | ||
=== | ||
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.. toctree:: | ||
:maxdepth: 4 | ||
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src |
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src package | ||
=========== | ||
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Submodules | ||
---------- | ||
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src.config module | ||
----------------- | ||
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.. automodule:: src.config | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
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src.data module | ||
--------------- | ||
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.. automodule:: src.data | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
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src.model module | ||
---------------- | ||
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.. automodule:: src.model | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: | ||
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src.utils module | ||
---------------- | ||
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.. automodule:: src.utils | ||
:members: | ||
:undoc-members: | ||
:show-inheritance: |
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/* Compatability shim for jQuery and underscores.js. | ||
* | ||
* Copyright Sphinx contributors | ||
* Released under the two clause BSD licence | ||
*/ | ||
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/** | ||
* small helper function to urldecode strings | ||
* | ||
* See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL | ||
*/ | ||
jQuery.urldecode = function(x) { | ||
if (!x) { | ||
return x | ||
} | ||
return decodeURIComponent(x.replace(/\+/g, ' ')); | ||
}; | ||
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/** | ||
* small helper function to urlencode strings | ||
*/ | ||
jQuery.urlencode = encodeURIComponent; | ||
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/** | ||
* This function returns the parsed url parameters of the | ||
* current request. Multiple values per key are supported, | ||
* it will always return arrays of strings for the value parts. | ||
*/ | ||
jQuery.getQueryParameters = function(s) { | ||
if (typeof s === 'undefined') | ||
s = document.location.search; | ||
var parts = s.substr(s.indexOf('?') + 1).split('&'); | ||
var result = {}; | ||
for (var i = 0; i < parts.length; i++) { | ||
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var key = jQuery.urldecode(tmp[0]); | ||
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if (key in result) | ||
result[key].push(value); | ||
else | ||
result[key] = [value]; | ||
} | ||
return result; | ||
}; | ||
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/** | ||
* highlight a given string on a jquery object by wrapping it in | ||
* span elements with the given class name. | ||
*/ | ||
jQuery.fn.highlightText = function(text, className) { | ||
function highlight(node, addItems) { | ||
if (node.nodeType === 3) { | ||
var val = node.nodeValue; | ||
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if (pos >= 0 && | ||
!jQuery(node.parentNode).hasClass(className) && | ||
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var span; | ||
var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg"); | ||
if (isInSVG) { | ||
span = document.createElementNS("http://www.w3.org/2000/svg", "tspan"); | ||
} else { | ||
span = document.createElement("span"); | ||
span.className = className; | ||
} | ||
span.appendChild(document.createTextNode(val.substr(pos, text.length))); | ||
node.parentNode.insertBefore(span, node.parentNode.insertBefore( | ||
document.createTextNode(val.substr(pos + text.length)), | ||
node.nextSibling)); | ||
node.nodeValue = val.substr(0, pos); | ||
if (isInSVG) { | ||
var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect"); | ||
var bbox = node.parentElement.getBBox(); | ||
rect.x.baseVal.value = bbox.x; | ||
rect.y.baseVal.value = bbox.y; | ||
rect.width.baseVal.value = bbox.width; | ||
rect.height.baseVal.value = bbox.height; | ||
rect.setAttribute('class', className); | ||
addItems.push({ | ||
"parent": node.parentNode, | ||
"target": rect}); | ||
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} | ||
} | ||
else if (!jQuery(node).is("button, select, textarea")) { | ||
jQuery.each(node.childNodes, function() { | ||
highlight(this, addItems); | ||
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} | ||
var addItems = []; | ||
var result = this.each(function() { | ||
highlight(this, addItems); | ||
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for (var i = 0; i < addItems.length; ++i) { | ||
jQuery(addItems[i].parent).before(addItems[i].target); | ||
} | ||
return result; | ||
}; | ||
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/* | ||
* backward compatibility for jQuery.browser | ||
* This will be supported until firefox bug is fixed. | ||
*/ | ||
if (!jQuery.browser) { | ||
jQuery.uaMatch = function(ua) { | ||
ua = ua.toLowerCase(); | ||
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var match = /(chrome)[ \/]([\w.]+)/.exec(ua) || | ||
/(webkit)[ \/]([\w.]+)/.exec(ua) || | ||
/(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || | ||
/(msie) ([\w.]+)/.exec(ua) || | ||
ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || | ||
[]; | ||
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return { | ||
browser: match[ 1 ] || "", | ||
version: match[ 2 ] || "0" | ||
}; | ||
}; | ||
jQuery.browser = {}; | ||
jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true; | ||
} |
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