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EmanuelSommer committed Apr 25, 2024
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4 changes: 4 additions & 0 deletions .buildinfo
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: d668ec34cc48c7570a30fdb4e6373d49
tags: 645f666f9bcd5a90fca523b33c5a78b7
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37 changes: 37 additions & 0 deletions _sources/api.md.txt
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# API reference

## Data

```{eval-rst}
.. automodule:: src.data
:members:
:undoc-members:
:show-inheritance:
```

## Models

```{eval-rst}
.. automodule:: src.model
:members:
:undoc-members:
:show-inheritance:
```

## Config

```{eval-rst}
.. automodule:: src.config
:members:
:undoc-members:
:show-inheritance:
```

## Utils

```{eval-rst}
.. automodule:: src.utils
:members:
:undoc-members:
:show-inheritance:
```
82 changes: 82 additions & 0 deletions _sources/index.rst.txt
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Welcome to the documentation of the OSIS Reproducability Python Template!
===============================================================

.. toctree::
:maxdepth: 2
:caption: Contents:
:glob:

source/*

|Latest Version| |Python 3.10+| |Documentation| |Code Style Black|
|codecov| |License| |GitHub|

This Project contains an example python package for the Advanced
Reproducibility Workshop (OSIS).

Introduction
------------

Hi there! Here is the right place for a brief introduction to the
project. The Documentation is available
`here <https://datascience-lmu.github.io/osis_python_repro/>`__.

The random project logo was created with Stable Diffusion 2 (Rombach
et al., 2022).

Installation
------------

- Setup a virtual environment with ``python -m venv venv``
- Activate the virtual environment with ``source venv/bin/activate``
- Install the project with poetry ``poetry install`` (Have poetry
installed)

Usage
-----

Populate this section with instructions on how to use the project.

Development Setup
-----------------

- Install pre-commit hooks with ``pre-commit install``
- Run tests with ``unittest`` with
``python -m unittest discover -s tests``

Contribution Guidelines
-----------------------

Populate this section with guidelines on how to contribute to the
project.

Citation
--------

If you use this project, please cite it as follows:

::

@misc{osisPyRepr2024,
author = {Emanuel Sommer and Tobias Weber and Lisa Wimmer},
title = {Advanced Reproducibility Workshop - Python Package Template},
year = {2024},
}

License
-------

This project is licensed under the MIT License - see the
`LICENSE <LICENSE>`__ file for details.

.. |Latest Version| image:: https://img.shields.io/badge/version-0.1.0-g
.. |Python 3.10+| image:: https://img.shields.io/badge/python-3.10%2C%203.11%2C%203.12-blue?logo=python
.. |Documentation| image:: https://img.shields.io/badge/documentation-view-blue?logo=read-the-docs
:target: https://datascience-lmu.github.io/osis_python_repro/
.. |Code Style Black| image:: https://img.shields.io/badge/code%20style-black-black
.. |codecov| image:: https://codecov.io/gh/DataScience-LMU/osis_python_repro/graph/badge.svg?token=DTLY6DO9OG
:target: https://codecov.io/gh/DataScience-LMU/osis_python_repro
.. |License| image:: https://img.shields.io/badge/license-MIT-green
:target: LICENSE
.. |GitHub| image:: https://img.shields.io/badge/GitHub-View%20on%20GitHub-lightgrey?logo=github
:target: https://github.com/DataScience-LMU/osis_python_repro
7 changes: 7 additions & 0 deletions _sources/source/modules.rst.txt
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src
===

.. toctree::
:maxdepth: 4

src
37 changes: 37 additions & 0 deletions _sources/source/src.rst.txt
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src package
===========

Submodules
----------

src.config module
-----------------

.. automodule:: src.config
:members:
:undoc-members:
:show-inheritance:

src.data module
---------------

.. automodule:: src.data
:members:
:undoc-members:
:show-inheritance:

src.model module
----------------

.. automodule:: src.model
:members:
:undoc-members:
:show-inheritance:

src.utils module
----------------

.. automodule:: src.utils
:members:
:undoc-members:
:show-inheritance:
123 changes: 123 additions & 0 deletions _static/_sphinx_javascript_frameworks_compat.js
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/* Compatability shim for jQuery and underscores.js.
*
* Copyright Sphinx contributors
* Released under the two clause BSD licence
*/

/**
* small helper function to urldecode strings
*
* See https://developer.mozilla.org/en-US/docs/Web/JavaScript/Reference/Global_Objects/decodeURIComponent#Decoding_query_parameters_from_a_URL
*/
jQuery.urldecode = function(x) {
if (!x) {
return x
}
return decodeURIComponent(x.replace(/\+/g, ' '));
};

/**
* small helper function to urlencode strings
*/
jQuery.urlencode = encodeURIComponent;

/**
* This function returns the parsed url parameters of the
* current request. Multiple values per key are supported,
* it will always return arrays of strings for the value parts.
*/
jQuery.getQueryParameters = function(s) {
if (typeof s === 'undefined')
s = document.location.search;
var parts = s.substr(s.indexOf('?') + 1).split('&');
var result = {};
for (var i = 0; i < parts.length; i++) {
var tmp = parts[i].split('=', 2);
var key = jQuery.urldecode(tmp[0]);
var value = jQuery.urldecode(tmp[1]);
if (key in result)
result[key].push(value);
else
result[key] = [value];
}
return result;
};

/**
* highlight a given string on a jquery object by wrapping it in
* span elements with the given class name.
*/
jQuery.fn.highlightText = function(text, className) {
function highlight(node, addItems) {
if (node.nodeType === 3) {
var val = node.nodeValue;
var pos = val.toLowerCase().indexOf(text);
if (pos >= 0 &&
!jQuery(node.parentNode).hasClass(className) &&
!jQuery(node.parentNode).hasClass("nohighlight")) {
var span;
var isInSVG = jQuery(node).closest("body, svg, foreignObject").is("svg");
if (isInSVG) {
span = document.createElementNS("http://www.w3.org/2000/svg", "tspan");
} else {
span = document.createElement("span");
span.className = className;
}
span.appendChild(document.createTextNode(val.substr(pos, text.length)));
node.parentNode.insertBefore(span, node.parentNode.insertBefore(
document.createTextNode(val.substr(pos + text.length)),
node.nextSibling));
node.nodeValue = val.substr(0, pos);
if (isInSVG) {
var rect = document.createElementNS("http://www.w3.org/2000/svg", "rect");
var bbox = node.parentElement.getBBox();
rect.x.baseVal.value = bbox.x;
rect.y.baseVal.value = bbox.y;
rect.width.baseVal.value = bbox.width;
rect.height.baseVal.value = bbox.height;
rect.setAttribute('class', className);
addItems.push({
"parent": node.parentNode,
"target": rect});
}
}
}
else if (!jQuery(node).is("button, select, textarea")) {
jQuery.each(node.childNodes, function() {
highlight(this, addItems);
});
}
}
var addItems = [];
var result = this.each(function() {
highlight(this, addItems);
});
for (var i = 0; i < addItems.length; ++i) {
jQuery(addItems[i].parent).before(addItems[i].target);
}
return result;
};

/*
* backward compatibility for jQuery.browser
* This will be supported until firefox bug is fixed.
*/
if (!jQuery.browser) {
jQuery.uaMatch = function(ua) {
ua = ua.toLowerCase();

var match = /(chrome)[ \/]([\w.]+)/.exec(ua) ||
/(webkit)[ \/]([\w.]+)/.exec(ua) ||
/(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) ||
/(msie) ([\w.]+)/.exec(ua) ||
ua.indexOf("compatible") < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) ||
[];

return {
browser: match[ 1 ] || "",
version: match[ 2 ] || "0"
};
};
jQuery.browser = {};
jQuery.browser[jQuery.uaMatch(navigator.userAgent).browser] = true;
}
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