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Update openslide v4 #369

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Update openslide v4 #369

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@jamesgwen jamesgwen commented Oct 17, 2023

Issue #368

  • Changing openslide-python to 1.3.1.
  • Updating requirements in /pathml/docs/readthedocs-requirements.txt
  • Updating environment.yml to change how miniconda is installed.

Dana-Farber and others added 30 commits December 16, 2022 11:07
Bumps [ipython](https://github.com/ipython/ipython) from 7.31.1 to 8.10.0.
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@7.31.1...8.10.0)

---
updated-dependencies:
- dependency-name: ipython
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
…thon-8.10.0

Bump ipython from 7.31.1 to 8.10.0 in /docs
Add instructions for Google colab
Added new build, due to conflicts with urllib3 recent updates.
Update version
Updated Ubuntu OS
Changed ubuntu version to 22.04
Changed Ubuntu version
Update GitHub Actions workflow to use mamba for dependency management
Excluding python=3.9 to resolve the following issue is github action runs:

 Could not solve for environment specs
  The following packages are incompatible
  ├─ python 3.8  is requested and can be installed;
  └─ python 3.9**  is uninstallable because it conflicts with any installable versions previously reported.
Added python 3.9 to test the environment
Excluding python 3.8 as requirement
Excluded python version as dependency
sreekarreddydfci and others added 19 commits May 26, 2023 12:30
Exclude python-spams dependency
Replaced conda with mamba
Using setup-micromamba to setup environment, installing python-spams.
Added micromamba to setup environment
rollback to mamba, couldn't resolve openjdk 8 when using micromamba
Update environment.yml and test-conda.yml
Update Environment Configuration and Dependencies
Update openslide-python to v1.2.0 to resolve 'ANTIALIAS' AttributeError

This commit upgrades openslide-python to version 1.2.0 to address an AttributeError related to the 'ANTIALIAS' attribute in the PIL.Image module. The issue was triggered due to the deprecation of 'ANTIALIAS' in Pillow v10.0.0.
updated the Download counter button
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codecov-commenter commented Oct 18, 2023

Codecov Report

Merging #369 (c058c1d) into dev (d95ff9b) will increase coverage by 0.19%.
The diff coverage is 100.00%.

❗ Your organization needs to install the Codecov GitHub app to enable full functionality.

@@            Coverage Diff             @@
##              dev     #369      +/-   ##
==========================================
+ Coverage   86.18%   86.37%   +0.19%     
==========================================
  Files          25       27       +2     
  Lines        2359     2503     +144     
==========================================
+ Hits         2033     2162     +129     
- Misses        326      341      +15     
Files Coverage Δ
pathml/_version.py 100.00% <100.00%> (ø)

... and 2 files with indirect coverage changes

@jamesgwen jamesgwen mentioned this pull request Oct 18, 2023
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5 participants