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runpy.sh
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runpy.sh
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# Original list
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'IUPred-L' &
# SPOT
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt-t -c 1 -l 4 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'IUPred-L' &
# APEX-2
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'IUPred-L' &
# APEX-AT
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 16 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 4 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-04-17_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'IUPred-L' &
# Strict run of IDR caller (>75% consensus; 7 or more callers agree; No limit on length)
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 7 -l 1 &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 7 -l 1 &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 7 -l 1 &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 7 -l 1 &
# Either VSL2b or IUPRed-L (1 caller consensus; No limit on length)
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_AT-APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_APEX2_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_SPOT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i 2018-05-01_Output/*_*_DiDBIT_Biotinylated-sites-with-positional-information_BY-PROTEIN.txt -c 1 -l 1 -w 'IUPred-L' &
# For HEK293
python Get_IDRs-DM-v2.py -i Input/*_*_*_HEK293_with-ptms_BY-PROTEIN.txt -c 1 -l 1 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i Input/*_*_*_HEK293_with-ptms_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i Input/*_*_*_HEK293_with-ptms_BY-PROTEIN.txt -c 1 -l 1 -w 'VSL2b' 'IUPred-L' &
python Get_IDRs-DM-v2.py -i Input/*_*_*_HEK293_with-ptms_BY-PROTEIN.txt -c 7 -l 1 &
# For HEK293 RBPs
python Get_IDRs-DM-v2.py -i Input/2012_Molecular-Cell_Baltz_hek293-RBP_with-ptms_BY-PROTEINS.tab -c 1 -l 1 -w 'IUPred-L' &
python Get_IDRs-DM-v2.py -i Input/2012_Molecular-Cell_Baltz_hek293-RBP_with-ptms_BY-PROTEINS.tab -c 1 -l 1 -w 'VSL2b' &
python Get_IDRs-DM-v2.py -i Input/2012_Molecular-Cell_Baltz_hek293-RBP_with-ptms_BY-PROTEINS.tab -c 1 -l 1 -w 'VSL2b' 'IUPred-L' &
python Get_IDRs-DM-v2.py -i Input/2012_Molecular-Cell_Baltz_hek293-RBP_with-ptms_BY-PROTEINS.tab -c 7 -l 1 &
# For downloading URLs
python printUrl.py -i