Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add a new column in the Pacbio Sequencing Run table for the real run name #4166

Open
3 tasks
Karl-Svard opened this issue Jan 29, 2025 · 0 comments
Open
3 tasks
Assignees

Comments

@Karl-Svard
Copy link
Contributor

As a LIMS developer and prod bioinfo member,
I want a new column to be added to the Pacbio Sequencing Run table for run names (not Run ID),
So that we can in an easier fashion fetch run-related QC results.

Work impact

Answer the following questions:

  • Is there currently a workaround for this issue? If so, what is it?
    • Using the SMRT Link API we can convert Run Name to Run ID and then fetch the needed information from StatusDB. NOTE: Run names are NOT unique, while run IDs are.
  • How much time would be saved by implementing this feature on a weekly basis?
    • It's hard to estimate now, but finding run info in the SMRT Link web browser would be easier.
  • How many users are affected by this issue?
    • Currently only me :/ (but there will be more when the workflow has been put into production)
  • Are customers affected by this issue?
    • Nope.

Acceptance Criteria

  • Rename the current column called "Run Name" in Pacbio Sequencing Run to "Run ID"
  • Add a new column in Pacbio Sequencing Run called "Run Name" (or similar if you don't want to re-use the old one)
  • Update the post-processing of Revio runs to also parse the run name from the metadata file

Notes

  • Additional information.
  • Dependencies.
  • Related user stories.
@Karl-Svard Karl-Svard changed the title Add new column in the Pacbio Sequencing Run table for the proper run name Add a new column in the Pacbio Sequencing Run table for the real run name Jan 29, 2025
@islean islean self-assigned this Jan 30, 2025
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants