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As a LIMS developer and prod bioinfo member,
I want a new column to be added to the Pacbio Sequencing Run table for run names (not Run ID),
So that we can in an easier fashion fetch run-related QC results.
Work impact
Answer the following questions:
Is there currently a workaround for this issue? If so, what is it?
Using the SMRT Link API we can convert Run Name to Run ID and then fetch the needed information from StatusDB. NOTE: Run names are NOT unique, while run IDs are.
How much time would be saved by implementing this feature on a weekly basis?
It's hard to estimate now, but finding run info in the SMRT Link web browser would be easier.
How many users are affected by this issue?
Currently only me :/ (but there will be more when the workflow has been put into production)
Are customers affected by this issue?
Nope.
Acceptance Criteria
Rename the current column called "Run Name" in Pacbio Sequencing Run to "Run ID"
Add a new column in Pacbio Sequencing Run called "Run Name" (or similar if you don't want to re-use the old one)
Update the post-processing of Revio runs to also parse the run name from the metadata file
Notes
Additional information.
Dependencies.
Related user stories.
The text was updated successfully, but these errors were encountered:
Karl-Svard
changed the title
Add new column in the Pacbio Sequencing Run table for the proper run name
Add a new column in the Pacbio Sequencing Run table for the real run name
Jan 29, 2025
As a LIMS developer and prod bioinfo member,
I want a new column to be added to the
Pacbio Sequencing Run
table for run names (not Run ID),So that we can in an easier fashion fetch run-related QC results.
Work impact
Answer the following questions:
Acceptance Criteria
Pacbio Sequencing Run
to "Run ID"Pacbio Sequencing Run
called "Run Name" (or similar if you don't want to re-use the old one)Notes
The text was updated successfully, but these errors were encountered: