From a25c783341c5e706934de1a15b8b9a0156610e30 Mon Sep 17 00:00:00 2001 From: Zhaoyi Shen <11598433+szy21@users.noreply.github.com> Date: Thu, 15 Aug 2024 10:41:10 -0700 Subject: [PATCH] update ClimaLand --- experiments/ClimaEarth/Manifest.toml | 256 ++++++++++++++------------- 1 file changed, 133 insertions(+), 123 deletions(-) diff --git a/experiments/ClimaEarth/Manifest.toml b/experiments/ClimaEarth/Manifest.toml index a6c655868..3139c0578 100644 --- a/experiments/ClimaEarth/Manifest.toml +++ b/experiments/ClimaEarth/Manifest.toml @@ -2,12 +2,12 @@ julia_version = "1.10.4" manifest_format = "2.0" -project_hash = "26bc87e2a5206094ca53b64409eb5da90aa13fe5" +project_hash = "04e30818cc020522de4d9492d204d9b140037181" [[deps.ADTypes]] -git-tree-sha1 = "aa4d425271a914d8c4af6ad9fccb6eb3aec662c7" +git-tree-sha1 = "99a6f5d0ce1c7c6afdb759daa30226f71c54f6b0" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.6.1" +version = "1.7.1" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.ADTypes.extensions] @@ -61,6 +61,11 @@ weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.AdaptivePredicates]] +git-tree-sha1 = "7d5da5dd472490d048b081ca1bda4a7821b06456" +uuid = "35492f91-a3bd-45ad-95db-fcad7dcfedb7" +version = "1.1.1" + [[deps.AliasTables]] deps = ["PtrArrays", "Random"] git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" @@ -90,10 +95,10 @@ uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "5c9b74c973181571deb6442d41e5c902e6b9f38e" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "f54c23a5d304fb87110de62bace7777d59088c34" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.12.0" +version = "7.15.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" @@ -103,6 +108,7 @@ version = "7.12.0" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -114,6 +120,7 @@ version = "7.12.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -263,10 +270,10 @@ weakdeps = ["ChainRulesCore", "EnzymeCore", "SpecialFunctions"] SpecialFunctionsExt = "SpecialFunctions" [[deps.CUDA_Driver_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "97df9d4d6be8ac6270cb8fd3b8fc413690820cbd" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "325058b426c2b421e3d2df3d5fa646d72d2e3e7e" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.9.1+1" +version = "0.9.2+0" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -282,9 +289,9 @@ version = "0.14.1+0" [[deps.Cairo]] deps = ["Cairo_jll", "Colors", "Glib_jll", "Graphics", "Libdl", "Pango_jll"] -git-tree-sha1 = "d0b3f8b4ad16cb0a2988c6788646a5e6a17b6b1b" +git-tree-sha1 = "7b6ad8c35f4bc3bca8eb78127c8b99719506a5fb" uuid = "159f3aea-2a34-519c-b102-8c37f9878175" -version = "1.0.5" +version = "1.1.0" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] @@ -298,12 +305,6 @@ git-tree-sha1 = "a2f1c8c668c8e3cb4cca4e57a8efdb09067bb3fd" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.0+2" -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" - [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] git-tree-sha1 = "71acdbf594aab5bbb2cec89b208c41b4c411e49f" @@ -384,9 +385,9 @@ version = "0.2.3" [[deps.ClimaLand]] deps = ["Adapt", "ArtifactWrappers", "ClimaComms", "ClimaCore", "ClimaDiagnostics", "ClimaUtilities", "DataFrames", "Dates", "DocStringExtensions", "Insolation", "Interpolations", "IntervalSets", "LazyArtifacts", "LinearAlgebra", "NCDatasets", "SciMLBase", "StaticArrays", "SurfaceFluxes", "Thermodynamics", "UnrolledUtilities"] -git-tree-sha1 = "b1e7a5ada14110be3e15684d72f95edb3727a547" +git-tree-sha1 = "0863d9398ee0c414679296d0bd49bb4aed8f08b9" uuid = "08f4d4ce-cf43-44bb-ad95-9d2d5f413532" -version = "0.14.0" +version = "0.14.2" [deps.ClimaLand.extensions] CreateParametersExt = "ClimaParams" @@ -460,9 +461,9 @@ version = "0.22.1" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "b8fe8546d52ca154ac556809e10c75e6e7430ac8" +git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.5" +version = "0.7.6" [[deps.ColorBrewer]] deps = ["Colors", "JSON", "Test"] @@ -527,9 +528,9 @@ version = "1.0.0" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "b1c55339b7c6c350ee89f2c1604299660525b248" +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.15.0" +version = "4.16.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -625,11 +626,17 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fc173b380865f70627d7dd1190dc2fce6cc105af" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.14.10+0" + [[deps.DelaunayTriangulation]] -deps = ["EnumX", "ExactPredicates", "Random"] -git-tree-sha1 = "078c716cbb032242df18b960e8b1fec6b1b0b9f9" +deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"] +git-tree-sha1 = "b5f1c6532d2ea71e99b74231b0a3d53fba846ced" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" -version = "1.0.5" +version = "1.1.3" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -650,10 +657,10 @@ uuid = "cd4c43a9-7502-52ba-aa6d-59fb2a88580b" version = "0.1.0+0" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] -git-tree-sha1 = "d1e8a4642e28b0945bde6e2e1ac569b9e0abd728" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"] +git-tree-sha1 = "72950e082d2241a1da1c924147943e2918471af9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.151.5" +version = "6.152.2" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -665,6 +672,7 @@ version = "6.151.5" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" @@ -678,14 +686,15 @@ version = "6.151.5" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "c959cfd2657d16beada157a74d52269e8556500e" +git-tree-sha1 = "91e10deadcf1e33168bac3140eb0ea8cc4dfa5d7" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "3.6.2" +version = "3.7.0" [deps.DiffEqCallbacks.weakdeps] OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -705,9 +714,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "c81579b549a00edf31582d318fec06523e0b607a" +git-tree-sha1 = "5fd57942dde7449335f585b3a4236e1fa2de0fd5" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.9" +version = "0.5.12" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -751,9 +760,9 @@ uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "9c405847cc7ecda2dc921ccf18b47ca150d7317e" +git-tree-sha1 = "0e0a1264b0942f1f3abb2b30891f2a590cc652ac" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.109" +version = "0.25.110" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -776,12 +785,6 @@ deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" - [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053" @@ -799,9 +802,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" [[deps.EnzymeCore]] -git-tree-sha1 = "d445df66dd8761a4c27df950db89c6a3a0629fe7" +git-tree-sha1 = "8f205a601760f4798a10f138c3940f0451d95188" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.7.7" +version = "0.7.8" weakdeps = ["Adapt"] [deps.EnzymeCore.extensions] @@ -872,9 +875,9 @@ version = "3.3.10+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "bd19de6fe8a3b18888f35e79832f97544684caa7" +git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.4" +version = "0.3.5" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -933,10 +936,10 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] FillArraysStatisticsExt = "Statistics" [[deps.FiniteDiff]] -deps = ["ArrayInterface", "LinearAlgebra", "Requires", "Setfield", "SparseArrays"] -git-tree-sha1 = "2de436b72c3422940cbe1367611d137008af7ec3" +deps = ["ArrayInterface", "LinearAlgebra", "Setfield", "SparseArrays"] +git-tree-sha1 = "f9219347ebf700e77ca1d48ef84e4a82a6701882" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.23.1" +version = "2.24.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -1012,19 +1015,19 @@ version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "8a66c07630d6428eaab3506a0eabfcf4a9edea05" +git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.11" +version = "0.4.12" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] -git-tree-sha1 = "3f74912a156096bd8fdbef211eff66ab446e7297" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] +git-tree-sha1 = "532f9126ad901533af1d4f5c198867227a7bb077" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.0+0" +version = "3.4.0+1" [[deps.GMP_jll]] deps = ["Artifacts", "Libdl"] @@ -1222,10 +1225,10 @@ uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.11.1+0" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "f218fe3736ddf977e0e772bc9a586b2383da2685" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "7c4195be1649ae622304031ed46a2f4df989f1eb" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.23" +version = "0.3.24" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -1339,14 +1342,14 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "18c59411ece4838b18cd7f537e56cf5e41ce5bfd" +git-tree-sha1 = "2787db24f4e03daf859c6509ff87764e4182f7d1" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.15" -weakdeps = ["Dates"] +version = "0.1.16" +weakdeps = ["Dates", "Test"] [deps.InverseFunctions.extensions] - DatesExt = "Dates" + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.InvertedIndices]] git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" @@ -1436,9 +1439,9 @@ version = "0.6.0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "LinearAlgebra", "MacroTools", "PrecompileTools", "Requires", "SparseArrays", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "d0448cebd5919e06ca5edc7a264631790de810ec" +git-tree-sha1 = "0fac59881e91c7233a9b0d47f4b7d9432e534f0f" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.22" +version = "0.9.23" weakdeps = ["EnzymeCore"] [deps.KernelAbstractions.extensions] @@ -1480,9 +1483,9 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "020abd49586480c1be84f57da0017b5d3db73f7c" +git-tree-sha1 = "2470e69781ddd70b8878491233cd09bc1bd7fc96" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "8.0.0" +version = "8.1.0" weakdeps = ["BFloat16s"] [deps.LLVM.extensions] @@ -1490,9 +1493,9 @@ weakdeps = ["BFloat16s"] [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "c2636c264861edc6d305e6b4d528f09566d24c5e" +git-tree-sha1 = "597d1c758c9ae5d985ba4202386a607c675ee700" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.30+0" +version = "0.0.31+0" [[deps.LLVMLoopInfo]] git-tree-sha1 = "2e5c102cfc41f48ae4740c7eca7743cc7e7b75ea" @@ -1527,16 +1530,18 @@ version = "1.3.1" [[deps.Latexify]] deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "5b0d630f3020b82c0775a51d05895852f8506f50" +git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.4" +version = "0.16.5" [deps.Latexify.extensions] DataFramesExt = "DataFrames" + SparseArraysExt = "SparseArrays" SymEngineExt = "SymEngine" [deps.Latexify.weakdeps] DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" [[deps.LayoutPointers]] @@ -1547,9 +1552,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "b8ea0abe6cc872996e87356951d286d25d485aba" +git-tree-sha1 = "507b423197fdd9e77b74aa2532c0a05eb7eb4004" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.1.9" +version = "2.2.0" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1655,9 +1660,9 @@ version = "2.40.1+0" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "7bbea35cec17305fc70a0e5b4641477dc0789d9d" +git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.2.0" +version = "7.3.0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] @@ -1680,10 +1685,10 @@ version = "2.8.0" LDLFactorizations = "40e66cde-538c-5869-a4ad-c39174c6795b" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "b2e2dba60642e07c062eb3143770d7e234316772" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "CpuId", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "ee625f4053362526950661ce3022c7a483c6f8e5" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.30.2" +version = "2.32.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -1760,9 +1765,9 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] [[deps.Lz4_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6c26c5e8a4203d43b5497be3ec5d4e0c3cde240a" +git-tree-sha1 = "7f26c8fc5229e68484e0b3447312c98e16207d11" uuid = "5ced341a-0733-55b8-9ab6-a4889d929147" -version = "1.9.4+0" +version = "1.10.0+0" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] @@ -1955,9 +1960,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "3adb1e5945b5a6b1eaee754077f25ccc402edd7f" +git-tree-sha1 = "bcd8812e751326ff1d4b2dd50764b93df51f143b" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "3.13.1" +version = "3.14.0" [deps.NonlinearSolve.extensions] NonlinearSolveBandedMatricesExt = "BandedMatrices" @@ -2194,10 +2199,10 @@ version = "1.40.5" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "9ff799e8fb8ed6717710feee3be3bc20645daa97" +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "6d38fea02d983051776a856b7df75b30cf9a3c1f" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.15" +version = "0.7.16" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -2224,9 +2229,9 @@ version = "23.12.0+1" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "406c29a7f46706d379a3bce45671b4e3a39ddfbc" +git-tree-sha1 = "d7f3f63331c7c8c81245b4ee2815b7d496365833" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.22" +version = "0.4.23" [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" @@ -2317,9 +2322,9 @@ version = "6.7.1+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9b23c31e76e333e6fb4c1595ae6afa74966a729e" +git-tree-sha1 = "e237232771fdafbae3db5c31275303e056afaa9f" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.9.4" +version = "2.10.1" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -2347,10 +2352,10 @@ uuid = "74087812-796a-5b5d-8853-05524746bad3" version = "1.7.0" [[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +deps = ["Random"] +git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" +version = "1.6.0" [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" @@ -2380,10 +2385,10 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "SparseArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "b450d967a770fb13d0e26358f58375e20361cf9c" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "b034171b93aebc81b3e1890a036d13a9c4a9e3e0" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.26.0" +version = "3.27.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2391,6 +2396,7 @@ version = "3.26.0" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" @@ -2400,6 +2406,7 @@ version = "3.26.0" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2434,9 +2441,9 @@ version = "0.7.1" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d483cd324ce5cf5d61b77930f0bbd6cb61927d21" +git-tree-sha1 = "e60724fd3beea548353984dc61c943ecddb0e29a" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.4.2+0" +version = "0.4.3+0" [[deps.RootSolvers]] deps = ["ForwardDiff"] @@ -2508,16 +2515,17 @@ version = "2.43.1" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "SparseArrays", "StaticArraysCore"] -git-tree-sha1 = "10499f619ef6e890f3f4a38914481cc868689cd5" +deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "23b02c588ac9a17ecb276cc62ab37f3e4fe37b32" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.8" +version = "0.3.9" +weakdeps = ["SparseArrays"] [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "cfdd1200d150df1d3c055cc72ee6850742e982d7" +git-tree-sha1 = "20ad3e7c137156c50c93c888d0f2bc5b7883c729" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.4.1" +version = "1.4.2" [[deps.Scratch]] deps = ["Dates"] @@ -2574,9 +2582,9 @@ version = "1.1.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "58b144f34e44252b2de0acb5a9dbbb7ea5cd75d7" +git-tree-sha1 = "4d7a7c177bcb4c6dc465f09db91bfdb28c578919" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "1.10.1" +version = "1.12.0" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2618,9 +2626,9 @@ version = "1.10.0" [[deps.SparseDiffTools]] deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "469f51f8c4741ce944be2c0b65423b518b1405b0" +git-tree-sha1 = "c9e5d7ee75cf6a1ca3a22c9a6a4ef451792cf62b" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.19.0" +version = "2.20.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" @@ -2638,9 +2646,9 @@ version = "2.19.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "Compat", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "277e10c002cd780a752bded3b95a8cbc791d646b" +git-tree-sha1 = "ad048e784b816e4de5553a13f1daf148412f3dbd" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.3.5" +version = "0.3.6" [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] @@ -2671,10 +2679,10 @@ uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" version = "1.1.1" [[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Requires", "SparseArrays", "Static", "SuiteSparse"] -git-tree-sha1 = "8963e5a083c837531298fc41599182a759a87a6d" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] +git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.5.1" +version = "1.8.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2783,9 +2791,9 @@ weakdeps = ["ClimaParams"] [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "9c490ee01823dc443da25bf9225827e3cdd2d7e9" +git-tree-sha1 = "c9fce29fb41a10677e24f74421ebe31220b81ad0" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.26" +version = "0.3.28" [[deps.TOML]] deps = ["Dates"] @@ -2875,13 +2883,9 @@ uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" version = "0.5.24" [[deps.TranscodingStreams]] -git-tree-sha1 = "96612ac5365777520c3c5396314c8cf7408f436a" +git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.11.1" -weakdeps = ["Random", "Test"] - - [deps.TranscodingStreams.extensions] - TestExt = ["Test", "Random"] +version = "0.11.2" [[deps.TriangularSolve]] deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] @@ -2890,9 +2894,9 @@ uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" version = "0.2.1" [[deps.Tricks]] -git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" +git-tree-sha1 = "7822b97e99a1672bfb1b49b668a6d46d58d8cbcb" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.8" +version = "0.1.9" [[deps.TriplotBase]] git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" @@ -2963,9 +2967,9 @@ version = "0.2.1" [[deps.UnsafeAtomicsLLVM]] deps = ["LLVM", "UnsafeAtomics"] -git-tree-sha1 = "bf2c553f25e954a9b38c9c0593a59bb13113f9e5" +git-tree-sha1 = "4073c836c2befcb041e5fe306cb6abf621eb3140" uuid = "d80eeb9a-aca5-4d75-85e5-170c8b632249" -version = "0.1.5" +version = "0.2.0" [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" @@ -3240,6 +3244,12 @@ deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.8.0+1" +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" + [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" @@ -3272,9 +3282,9 @@ version = "1.10.3+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.7+2" [[deps.libzip_jll]] deps = ["Artifacts", "Bzip2_jll", "GnuTLS_jll", "JLLWrappers", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"]