From dea007254d7647e9929ca28171461cbc80053cbe Mon Sep 17 00:00:00 2001 From: Gabriele Bozzola Date: Thu, 29 Aug 2024 16:08:48 -0700 Subject: [PATCH] Remove unused dependencies --- .buildkite/Manifest.toml | 278 +++++++++++++++++++++++++++++------ Project.toml | 4 - src/Topologies/topology2d.jl | 2 +- 3 files changed, 233 insertions(+), 51 deletions(-) diff --git a/.buildkite/Manifest.toml b/.buildkite/Manifest.toml index ed74a907a2..8e57eb6cc9 100644 --- a/.buildkite/Manifest.toml +++ b/.buildkite/Manifest.toml @@ -309,7 +309,7 @@ weakdeps = ["CUDA", "MPI"] ClimaCommsMPIExt = "MPI" [[deps.ClimaCore]] -deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics", "Unrolled"] +deps = ["Adapt", "BandedMatrices", "BlockArrays", "ClimaComms", "CubedSphere", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "KrylovKit", "LinearAlgebra", "MultiBroadcastFusion", "NVTX", "PkgVersion", "RecursiveArrayTools", "RootSolvers", "SparseArrays", "StaticArrays", "Statistics"] path = ".." uuid = "d414da3d-4745-48bb-8d80-42e94e092884" version = "0.14.12" @@ -601,9 +601,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "Compat", "DocStringExtensions", "FillArrays", "LinearAlgebra", "PackageExtensionCompat", "SparseArrays", "SparseMatrixColorings"] -git-tree-sha1 = "06955b4e80eff01df10552ccf0226571bde94d49" +git-tree-sha1 = "e53e4eb7f8e7b25656ea17263b0c22f129091eeb" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.5.14" +version = "0.5.15" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -986,10 +986,10 @@ uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" version = "1.10.8" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "401e4f3f30f43af2c8478fc008da50096ea5240f" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.3.1+0" [[deps.HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] @@ -1089,10 +1089,10 @@ uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" version = "0.8.29" [[deps.JLD2]] -deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Reexport", "Requires", "TranscodingStreams", "UUIDs", "Unicode"] -git-tree-sha1 = "67d4690d32c22e28818a434b293a374cc78473d3" +deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "PrecompileTools", "Requires", "TranscodingStreams"] +git-tree-sha1 = "049950edff105ff73918d29dbf109220ff364157" uuid = "033835bb-8acc-5ee8-8aae-3f567f8a3819" -version = "0.4.51" +version = "0.4.52" [[deps.JLFzf]] deps = ["Pipe", "REPL", "Random", "fzf_jll"] @@ -1120,9 +1120,9 @@ version = "3.0.3+0" [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "7ae67d8567853d367e3463719356b8989e236069" +git-tree-sha1 = "4b415b6cccb9ab61fec78a621572c82ac7fa5776" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.34" +version = "0.9.35" [[deps.JuliaNVTXCallbacks_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1143,9 +1143,9 @@ version = "0.6.0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs", "UnsafeAtomics", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "35ceea58aa34ad08b1ae00a52622c62d1cfb8ce2" +git-tree-sha1 = "cb1cff88ef2f3a157cbad75bbe6b229e1975e498" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.24" +version = "0.9.25" weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] @@ -1488,9 +1488,9 @@ version = "0.4.17" [[deps.MPI]] deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "14cef41baf5b675b192b02a22c710f725ab333a7" +git-tree-sha1 = "5465632f9dd11aea0d912cb64a6f80640092a33e" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.20.20" +version = "0.20.21" [deps.MPI.extensions] AMDGPUExt = "AMDGPU" @@ -1534,10 +1534,14 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MaybeInplace]] -deps = ["ArrayInterface", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "1b9e613f2ca3b6cdcbfe36381e17ca2b66d4b3a1" +deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "54e2fdc38130c05b42be423e90da3bade29b74bd" uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" -version = "0.1.3" +version = "0.1.4" +weakdeps = ["SparseArrays"] + + [deps.MaybeInplace.extensions] + MaybeInplaceSparseArraysExt = "SparseArrays" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] @@ -1728,10 +1732,10 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.5+0" [[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6703a85cb3781bd5909d48730a67205f3f31a575" uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" +version = "1.3.3+0" [[deps.OrderedCollections]] git-tree-sha1 = "dfdf5519f235516220579f949664f1bf44e741c5" @@ -1739,10 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"FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", 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"RecursiveArrayTools", "Reexport", "Static"] +git-tree-sha1 = "920b52bef5ee155127727609033696920bb88e56" +uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" +version = "1.1.0" + +[[deps.OrdinaryDiffEqSDIRK]] +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "f6683803a58de600ab7a26d2f49411c9923e9721" +uuid = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" +version = "1.1.0" + +[[deps.OrdinaryDiffEqSSPRK]] +deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "Static", "StaticArrays"] +git-tree-sha1 = "7dbe4ac56f930df5e9abd003cedb54e25cbbea86" +uuid = "669c94d9-1f4b-4b64-b377-1aa079aa2388" +version = "1.2.0" + +[[deps.OrdinaryDiffEqStabilizedIRK]] +deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "StaticArrays"] +git-tree-sha1 = "348fd6def9a88518715425025eadd58517017325" +uuid = "e3e12d00-db14-5390-b879-ac3dd2ef6296" +version = "1.1.0" + +[[deps.OrdinaryDiffEqStabilizedRK]] +deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "StaticArrays"] +git-tree-sha1 = "1b0d894c880e25f7d0b022d7257638cf8ce5b311" +uuid = "358294b1-0aab-51c3-aafe-ad5ab194a2ad" +version = "1.1.0" + +[[deps.OrdinaryDiffEqSymplecticRK]] +deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport"] +git-tree-sha1 = "4e8b8c8b81df3df17e2eb4603115db3b30a88235" +uuid = "fa646aed-7ef9-47eb-84c4-9443fc8cbfa8" +version = "1.1.0" + +[[deps.OrdinaryDiffEqTsit5]] +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "Static", "TruncatedStacktraces"] +git-tree-sha1 = "96552f7d4619fabab4038a29ed37dd55e9eb513a" +uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" +version = "1.1.0" + +[[deps.OrdinaryDiffEqVerner]] +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "Static", "TruncatedStacktraces"] +git-tree-sha1 = "5bcb51505de78bdd7ad7e58c49c48dea672f6ac8" +uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" +version = "1.1.0" [[deps.P11Kit_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1769,9 +1957,9 @@ weakdeps = ["Requires", "TOML"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9dd97171646850ee607593965ce1f55063d8d3f9" +git-tree-sha1 = "e127b609fb9ecba6f201ba7ab753d5a605d53801" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.54.0+0" +version = "1.54.1+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1821,9 +2009,9 @@ version = "1.4.1" [[deps.Plots]] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "082f0c4b70c202c37784ce4bfbc33c9f437685bf" +git-tree-sha1 = "45470145863035bb124ca51b320ed35d071cc6c2" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.5" +version = "1.40.8" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -2082,9 +2270,9 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "7bc708ae6f9cb741f204cb6c9dda176e79fb4260" +git-tree-sha1 = "92d9aa6fc3c273933c9e55e04868fbe77416ee75" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.50.2" +version = "2.50.5" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2106,11 +2294,15 @@ version = "2.50.2" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] -deps = ["ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "23b02c588ac9a17ecb276cc62ab37f3e4fe37b32" +deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "e39c5f217f9aca640c8e27ab21acf557a3967db5" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.9" -weakdeps = ["SparseArrays"] +version = "0.3.10" +weakdeps = ["SparseArrays", "StaticArraysCore"] + + [deps.SciMLOperators.extensions] + SciMLOperatorsSparseArraysExt = "SparseArrays" + SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" [[deps.SciMLStructures]] deps = ["ArrayInterface"] @@ -2508,12 +2700,6 @@ git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8" uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" version = "1.6.4" -[[deps.Unrolled]] -deps = ["MacroTools"] -git-tree-sha1 = "6cc9d682755680e0f0be87c56392b7651efc2c7b" -uuid = "9602ed7d-8fef-5bc8-8597-8f21381861e8" -version = "0.1.5" - [[deps.UnsafeAtomics]] git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" @@ -2793,10 +2979,10 @@ uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" version = "3.9.0+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.15.2+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] @@ -2816,10 +3002,10 @@ uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" version = "1.11.0+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.3+0" [[deps.libinput_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] diff --git a/Project.toml b/Project.toml index 13f2b4ca13..cd891db3c7 100644 --- a/Project.toml +++ b/Project.toml @@ -9,7 +9,6 @@ BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" ClimaComms = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" CubedSphere = "7445602f-e544-4518-8976-18f8e8ae6cdb" -DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" GaussQuadrature = "d54b0c1a-921d-58e0-8e36-89d8069c0969" @@ -27,7 +26,6 @@ RootSolvers = "7181ea78-2dcb-4de3-ab41-2b8ab5a31e74" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -Unrolled = "9602ed7d-8fef-5bc8-8597-8f21381861e8" [weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -51,7 +49,6 @@ CountFlops = "0.1" CubedSphere = "0.2" CUDA = "5" Dates = "1" -DataStructures = "0.18" DocStringExtensions = "0.8, 0.9" FastBroadcast = "0.3" ForwardDiff = "0.10" @@ -82,7 +79,6 @@ Statistics = "1" StatsBase = "0.34" TerminalLoggers = "0.1" Test = "1" -Unrolled = "0.1" julia = "1.9" [extras] diff --git a/src/Topologies/topology2d.jl b/src/Topologies/topology2d.jl index 572500564b..a122467f8d 100644 --- a/src/Topologies/topology2d.jl +++ b/src/Topologies/topology2d.jl @@ -1,4 +1,4 @@ -using ClimaComms, DataStructures +using ClimaComms using GilbertCurves """