diff --git a/benchmarks/bickleyjet/Manifest.toml b/benchmarks/bickleyjet/Manifest.toml index 197284afd0..744a80044c 100644 --- a/benchmarks/bickleyjet/Manifest.toml +++ b/benchmarks/bickleyjet/Manifest.toml @@ -484,9 +484,9 @@ version = "1.0.2" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] -git-tree-sha1 = "ec7df74b7b2022e8252a8bfd4ec23411491adc3b" +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.17.0" +version = "0.17.1" weakdeps = ["MPI"] [deps.HDF5.extensions] @@ -612,15 +612,15 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c" +git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.2.1" +version = "6.3.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa" +git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.25+0" +version = "0.0.26+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -822,9 +822,9 @@ version = "0.3.2" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "a8027af3d1743b3bfae34e54872359fdebb31422" +git-tree-sha1 = "a7023883872e52bc29bcaac74f19adf39347d2d5" uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" -version = "10.1.3+4" +version = "10.1.4+0" [[deps.Missings]] deps = ["DataAPI"] @@ -879,9 +879,9 @@ version = "0.8.1+0" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "f3080f4212a8ba2ceb10a34b938601b862094314" +git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "4.1.5+0" +version = "4.1.6+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1343,9 +1343,9 @@ version = "1.25.0+0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4" +git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.4+0" +version = "2.11.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 789fd45123..ea3bd5f61b 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -468,9 +468,9 @@ version = "1.9.1" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "dc50f5ef15406701057895deda051f82e53d5773" +git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.2" +version = "6.130.4" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" @@ -832,9 +832,9 @@ version = "0.5.3" [[deps.GeoInterface]] deps = ["Extents"] -git-tree-sha1 = "bb198ff907228523f3dee1070ceee63b9359b6ab" +git-tree-sha1 = "d53480c0793b13341c40199190f92c611aa2e93c" uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.3.1" +version = "1.3.2" [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] @@ -873,9 +873,9 @@ version = "1.3.14+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4" +git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.8.0" +version = "1.9.0" [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] @@ -890,9 +890,9 @@ version = "1.0.2" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] -git-tree-sha1 = "ec7df74b7b2022e8252a8bfd4ec23411491adc3b" +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.17.0" +version = "0.17.1" weakdeps = ["MPI"] [deps.HDF5.extensions] @@ -1140,15 +1140,15 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c" +git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.2.1" +version = "6.3.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa" +git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.25+0" +version = "0.0.26+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1468,9 +1468,9 @@ version = "0.3.2" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "a8027af3d1743b3bfae34e54872359fdebb31422" +git-tree-sha1 = "a7023883872e52bc29bcaac74f19adf39347d2d5" uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" -version = "10.1.3+4" +version = "10.1.4+0" [[deps.Missings]] deps = ["DataAPI"] @@ -1559,10 +1559,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "e10debcea868cd6e51249e8eeaf191c25f68a640" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "7032be911404fe667e2a7ccd464ba5f2532797f2" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "1.10.1" +version = "2.0.1" [[deps.Observables]] git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" @@ -1611,9 +1611,9 @@ version = "0.8.1+0" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "f3080f4212a8ba2ceb10a34b938601b862094314" +git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "4.1.5+0" +version = "4.1.6+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1652,9 +1652,9 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "ede6c2334cb30bc83a450b282c10d0ae82fc122e" +git-tree-sha1 = "16d4feaf7e17ac63cb6bb742b0a4dfd50d1ef458" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.56.0" +version = "6.57.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1663,9 +1663,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "bf6085e8bd7735e68c210c6e5d81f9a6fe192060" +git-tree-sha1 = "b7c4f29f93b548caa58f703580f4d79ab753c8ac" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.19" +version = "0.11.21" [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] @@ -1765,9 +1765,9 @@ version = "1.39.0" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "d4c9ebdc6528a4aaf7cfcf43b482e927267b400d" +git-tree-sha1 = "c7dc9720390fcc296bf757b3f833f9e41c68a086" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.6" +version = "0.7.7" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -2026,9 +2026,9 @@ version = "0.6.39" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "fd34cc828616e35d4a86a24eb290186db2956f68" +git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.0.4" +version = "2.0.7" [deps.SciMLBase.extensions] ZygoteExt = "Zygote" @@ -2381,9 +2381,9 @@ version = "0.5.2" [[deps.TiffImages]] deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"] -git-tree-sha1 = "b7dc44cb005a7ef743b8fe98970afef003efdce7" +git-tree-sha1 = "7fd97bd1c5b1ff53a291cbd351d1d3d6ff4da5a5" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.6.6" +version = "0.6.7" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2532,9 +2532,9 @@ version = "1.18.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4" +git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.4+0" +version = "2.11.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] diff --git a/examples/Manifest.toml b/examples/Manifest.toml index ae37746f0f..9f5de432e6 100644 --- a/examples/Manifest.toml +++ b/examples/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.9.3" manifest_format = "2.0" -project_hash = "037057f753be71d701aa4d6f94452110f8465205" +project_hash = "54e34b7e35dd39c8b1a2b8d45c5228c1e7208e67" [[deps.ADTypes]] git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" @@ -188,16 +188,20 @@ uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.4" [[deps.CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "968c1365e2992824c3e7a794e30907483f8469a9" +deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "f062a48c26ae027f70c44f48f244862aec47bf99" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "4.4.1" +version = "5.0.0" +weakdeps = ["SpecialFunctions"] + + [deps.CUDA.extensions] + SpecialFunctionsExt = "SpecialFunctions" [[deps.CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "498f45593f6ddc0adff64a9310bb6710e851781b" +git-tree-sha1 = "35a37bb72b35964f2895c12c687ae263b4ac170c" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.5.0+1" +version = "0.6.0+3" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -207,9 +211,9 @@ version = "0.2.2" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "5248d9c45712e51e27ba9b30eebec65658c6ce29" +git-tree-sha1 = "bfe5a693a11522d58392f742243f2b50dc27afd6" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.6.0+0" +version = "0.9.2+0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -255,9 +259,9 @@ version = "0.7.2" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "203e4f8208bcd1584dcdd9e2210dd1a33b8f96ab" +git-tree-sha1 = "1b437bf71f2e35925e957715361bcfa60f68351a" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.9" +version = "0.7.10" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -375,6 +379,11 @@ git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" uuid = "adafc99b-e345-5852-983c-f28acb93d879" version = "0.3.1" +[[deps.Crayons]] +git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" +uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" +version = "4.1.1" + [[deps.CubedSphere]] deps = ["Elliptic", "FFTW", "Printf", "ProgressBars", "SpecialFunctions", "TaylorSeries", "Test"] git-tree-sha1 = "131498c78453d02b4821d8b93f6e44595399f19f" @@ -386,6 +395,12 @@ git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.15.0" +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" @@ -413,13 +428,14 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "0d9982e8dee851d519145857e79a17ee33ede154" +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.0" +version = "6.130.4" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = "Enzyme" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -431,6 +447,7 @@ version = "6.130.0" [deps.DiffEqBase.weakdeps] Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -678,9 +695,9 @@ version = "3.3.8+0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "2e57b4a4f9cc15e85a24d603256fe08e527f48d1" +git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.8.1" +version = "9.0.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -690,9 +707,9 @@ version = "0.1.5" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "72b2e3c2ba583d1a7aa35129e56cf92e07c083e3" +git-tree-sha1 = "5e4487558477f191c043166f8301dd0b4be4e2b2" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.21.4" +version = "0.24.5" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] @@ -743,9 +760,9 @@ version = "1.3.14+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4" +git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.8.0" +version = "1.9.0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -754,9 +771,9 @@ version = "1.0.2" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] -git-tree-sha1 = "ec7df74b7b2022e8252a8bfd4ec23411491adc3b" +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.17.0" +version = "0.17.1" weakdeps = ["MPI"] [deps.HDF5.extensions] @@ -801,6 +818,12 @@ git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -821,6 +844,11 @@ weakdeps = ["Statistics"] [deps.IntervalSets.extensions] IntervalSetsStatisticsExt = "Statistics" +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" @@ -905,15 +933,15 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c" +git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.2.1" +version = "6.3.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa" +git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.25+0" +version = "0.0.26+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1133,18 +1161,10 @@ uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2023.2.0+0" [[deps.MPI]] -deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PrecompileTools", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "1ccbd6980b4ff1e1e411086d01696048e6013653" +deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "Requires", "Serialization", "Sockets"] +git-tree-sha1 = "6d72bafd3960f9c119ceb8f034fef28346490fe5" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.20.10" - - [deps.MPI.extensions] - AMDGPUExt = "AMDGPU" - CUDAExt = "CUDA" - - [deps.MPI.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" +version = "0.20.8" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] @@ -1203,9 +1223,9 @@ version = "0.1.4" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "a8027af3d1743b3bfae34e54872359fdebb31422" +git-tree-sha1 = "a7023883872e52bc29bcaac74f19adf39347d2d5" uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" -version = "10.1.3+4" +version = "10.1.4+0" [[deps.Missings]] deps = ["DataAPI"] @@ -1272,10 +1292,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "e10debcea868cd6e51249e8eeaf191c25f68a640" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "7032be911404fe667e2a7ccd464ba5f2532797f2" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "1.10.1" +version = "2.0.1" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1307,9 +1327,9 @@ version = "0.8.1+0" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "f3080f4212a8ba2ceb10a34b938601b862094314" +git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "4.1.5+0" +version = "4.1.6+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1342,9 +1362,9 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "ede6c2334cb30bc83a450b282c10d0ae82fc122e" +git-tree-sha1 = "16d4feaf7e17ac63cb6bb742b0a4dfd50d1ef458" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.56.0" +version = "6.57.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1425,9 +1445,9 @@ version = "1.39.0" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "d4c9ebdc6528a4aaf7cfcf43b482e927267b400d" +git-tree-sha1 = "c7dc9720390fcc296bf757b3f833f9e41c68a086" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.6" +version = "0.7.7" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1435,6 +1455,12 @@ git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" version = "0.2.1" +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"] git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" @@ -1459,6 +1485,12 @@ git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.1" +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "ee094908d720185ddbdc58dbe0c1cbe35453ec7a" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.2.7" + [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" @@ -1595,9 +1627,9 @@ version = "0.6.39" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" +git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.98.1" +version = "2.0.7" [deps.SciMLBase.extensions] ZygoteExt = "Zygote" @@ -1623,6 +1655,12 @@ git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" version = "1.2.0" +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.0" + [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -1782,6 +1820,12 @@ git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" version = "0.4.17" +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a04cabe79c5f01f4d723cc6704070ada0b9d46d5" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.3.4" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2021,9 +2065,9 @@ version = "1.18.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4" +git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.4+0" +version = "2.11.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] diff --git a/lib/ClimaCoreMakie/examples/Manifest.toml b/lib/ClimaCoreMakie/examples/Manifest.toml index a3fe3d67c8..0f815f6fc5 100644 --- a/lib/ClimaCoreMakie/examples/Manifest.toml +++ b/lib/ClimaCoreMakie/examples/Manifest.toml @@ -630,9 +630,9 @@ version = "0.4.1" [[deps.GeoInterface]] deps = ["Extents"] -git-tree-sha1 = "bb198ff907228523f3dee1070ceee63b9359b6ab" +git-tree-sha1 = "d53480c0793b13341c40199190f92c611aa2e93c" uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.3.1" +version = "1.3.2" [[deps.GeoInterfaceRecipes]] deps = ["GeoInterface", "RecipesBase"] @@ -700,9 +700,9 @@ version = "1.0.2" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] -git-tree-sha1 = "ec7df74b7b2022e8252a8bfd4ec23411491adc3b" +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.17.0" +version = "0.17.1" weakdeps = ["MPI"] [deps.HDF5.extensions] @@ -938,15 +938,15 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c" +git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.2.1" +version = "6.3.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa" +git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.25+0" +version = "0.0.26+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1186,9 +1186,9 @@ version = "0.4.10" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "a8027af3d1743b3bfae34e54872359fdebb31422" +git-tree-sha1 = "a7023883872e52bc29bcaac74f19adf39347d2d5" uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" -version = "10.1.3+4" +version = "10.1.4+0" [[deps.Missings]] deps = ["DataAPI"] @@ -1306,9 +1306,9 @@ version = "0.8.1+0" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "f3080f4212a8ba2ceb10a34b938601b862094314" +git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "4.1.5+0" +version = "4.1.6+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1352,9 +1352,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "bf6085e8bd7735e68c210c6e5d81f9a6fe192060" +git-tree-sha1 = "b7c4f29f93b548caa58f703580f4d79ab753c8ac" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.19" +version = "0.11.21" [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] @@ -1498,9 +1498,9 @@ version = "1.9.0" [[deps.Proj]] deps = ["CEnum", "CoordinateTransformations", "GeoFormatTypes", "GeoInterface", "NetworkOptions", "PROJ_jll"] -git-tree-sha1 = "919a2519602220b8611af20908eb73824abbc880" +git-tree-sha1 = "76ab3cbf876f3c859b6cc5817d8262809add3e13" uuid = "c94c279d-25a6-4763-9509-64d165bea63e" -version = "1.6.0" +version = "1.7.0" [[deps.QOI]] deps = ["ColorTypes", "FileIO", "FixedPointNumbers"] @@ -1894,9 +1894,9 @@ version = "2.1.1" [[deps.TiffImages]] deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "ProgressMeter", "UUIDs"] -git-tree-sha1 = "b7dc44cb005a7ef743b8fe98970afef003efdce7" +git-tree-sha1 = "7fd97bd1c5b1ff53a291cbd351d1d3d6ff4da5a5" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.6.6" +version = "0.6.7" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -1979,9 +1979,9 @@ version = "0.5.5" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4" +git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.4+0" +version = "2.11.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] diff --git a/perf/Manifest.toml b/perf/Manifest.toml index 02c10c81d0..eccbaa2dfe 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.9.3" manifest_format = "2.0" -project_hash = "a0e6654ac8ff86eaa046a2da8cf5fbd3959ce466" +project_hash = "5f7c4e50749340673c58444df9351d2d7ed47529" [[deps.ADTypes]] git-tree-sha1 = "5d2e21d7b0d8c22f67483ef95ebdc39c0e6b6003" @@ -167,16 +167,20 @@ uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.4" [[deps.CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "968c1365e2992824c3e7a794e30907483f8469a9" +deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "Crayons", "DataFrames", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "NVTX", "Preferences", "PrettyTables", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "Statistics", "UnsafeAtomicsLLVM"] +git-tree-sha1 = "f062a48c26ae027f70c44f48f244862aec47bf99" uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "4.4.1" +version = "5.0.0" +weakdeps = ["SpecialFunctions"] + + [deps.CUDA.extensions] + SpecialFunctionsExt = "SpecialFunctions" [[deps.CUDA_Driver_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "498f45593f6ddc0adff64a9310bb6710e851781b" +git-tree-sha1 = "35a37bb72b35964f2895c12c687ae263b4ac170c" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.5.0+1" +version = "0.6.0+3" [[deps.CUDA_Runtime_Discovery]] deps = ["Libdl"] @@ -186,9 +190,9 @@ version = "0.2.2" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "5248d9c45712e51e27ba9b30eebec65658c6ce29" +git-tree-sha1 = "bfe5a693a11522d58392f742243f2b50dc27afd6" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.6.0+0" +version = "0.9.2+0" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -234,9 +238,9 @@ version = "0.7.2" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "203e4f8208bcd1584dcdd9e2210dd1a33b8f96ab" +git-tree-sha1 = "1b437bf71f2e35925e957715361bcfa60f68351a" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.9" +version = "0.7.10" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -382,6 +386,12 @@ git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.15.0" +[[deps.DataFrames]] +deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] +git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" +uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" +version = "1.6.1" + [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" @@ -678,9 +688,9 @@ version = "3.3.8+0" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "2e57b4a4f9cc15e85a24d603256fe08e527f48d1" +git-tree-sha1 = "8ad8f375ae365aa1eb2f42e2565a40b55a4b69a8" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.8.1" +version = "9.0.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -690,9 +700,9 @@ version = "0.1.5" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "72b2e3c2ba583d1a7aa35129e56cf92e07c083e3" +git-tree-sha1 = "5e4487558477f191c043166f8301dd0b4be4e2b2" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.21.4" +version = "0.24.5" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] @@ -743,9 +753,9 @@ version = "1.3.14+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1cf1d7dcb4bc32d7b4a5add4232db3750c27ecb4" +git-tree-sha1 = "899050ace26649433ef1af25bc17a815b3db52b7" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.8.0" +version = "1.9.0" [[deps.Graphviz_jll]] deps = ["Artifacts", "Cairo_jll", "Expat_jll", "JLLWrappers", "Libdl", "Pango_jll", "Pkg"] @@ -760,9 +770,9 @@ version = "1.0.2" [[deps.HDF5]] deps = ["Compat", "HDF5_jll", "Libdl", "MPIPreferences", "Mmap", "Preferences", "Printf", "Random", "Requires", "UUIDs"] -git-tree-sha1 = "ec7df74b7b2022e8252a8bfd4ec23411491adc3b" +git-tree-sha1 = "26407bd1c60129062cec9da63dc7d08251544d53" uuid = "f67ccb44-e63f-5c2f-98bd-6dc0ccc4ba2f" -version = "0.17.0" +version = "0.17.1" weakdeps = ["MPI"] [deps.HDF5.extensions] @@ -807,6 +817,12 @@ git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.3" +[[deps.InlineStrings]] +deps = ["Parsers"] +git-tree-sha1 = "9cc2baf75c6d09f9da536ddf58eb2f29dedaf461" +uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" +version = "1.4.0" + [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "ad37c091f7d7daf900963171600d7c1c5c3ede32" @@ -827,6 +843,11 @@ weakdeps = ["Statistics"] [deps.IntervalSets.extensions] IntervalSetsStatisticsExt = "Statistics" +[[deps.InvertedIndices]] +git-tree-sha1 = "0dc7b50b8d436461be01300fd8cd45aa0274b038" +uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" +version = "1.3.0" + [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" @@ -946,15 +967,15 @@ version = "3.0.0+1" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "a9d2ce1d5007b1e8f6c5b89c5a31ff8bd146db5c" +git-tree-sha1 = "4ea2928a96acfcf8589e6cd1429eff2a3a82c366" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.2.1" +version = "6.3.0" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "7ca6850ae880cc99b59b88517545f91a52020afa" +git-tree-sha1 = "e7c01b69bcbcb93fd4cbc3d0fea7d229541e18d2" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.25+0" +version = "0.0.26+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1174,18 +1195,10 @@ uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2023.2.0+0" [[deps.MPI]] -deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PrecompileTools", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "1ccbd6980b4ff1e1e411086d01696048e6013653" +deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "Requires", "Serialization", "Sockets"] +git-tree-sha1 = "6d72bafd3960f9c119ceb8f034fef28346490fe5" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.20.10" - - [deps.MPI.extensions] - AMDGPUExt = "AMDGPU" - CUDAExt = "CUDA" - - [deps.MPI.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" +version = "0.20.8" [[deps.MPICH_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] @@ -1244,9 +1257,9 @@ version = "0.3.2" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "a8027af3d1743b3bfae34e54872359fdebb31422" +git-tree-sha1 = "a7023883872e52bc29bcaac74f19adf39347d2d5" uuid = "9237b28f-5490-5468-be7b-bb81f5f5e6cf" -version = "10.1.3+4" +version = "10.1.4+0" [[deps.Missings]] deps = ["DataAPI"] @@ -1360,9 +1373,9 @@ version = "0.8.1+0" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "f3080f4212a8ba2ceb10a34b938601b862094314" +git-tree-sha1 = "e25c1778a98e34219a00455d6e4384e017ea9762" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "4.1.5+0" +version = "4.1.6+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] @@ -1490,9 +1503,9 @@ version = "1.39.0" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "d4c9ebdc6528a4aaf7cfcf43b482e927267b400d" +git-tree-sha1 = "c7dc9720390fcc296bf757b3f833f9e41c68a086" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.6" +version = "0.7.7" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1500,6 +1513,12 @@ git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6" uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" version = "0.2.1" +[[deps.PooledArrays]] +deps = ["DataAPI", "Future"] +git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" +uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" +version = "1.4.3" + [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "ForwardDiff", "Requires"] git-tree-sha1 = "f739b1b3cc7b9949af3b35089931f2b58c289163" @@ -1722,6 +1741,12 @@ git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" uuid = "6c6a2e73-6563-6170-7368-637461726353" version = "1.2.0" +[[deps.SentinelArrays]] +deps = ["Dates", "Random"] +git-tree-sha1 = "04bdff0b09c65ff3e06a05e3eb7b120223da3d39" +uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" +version = "1.4.0" + [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" @@ -2112,9 +2137,9 @@ version = "1.18.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "04a51d15436a572301b5abbb9d099713327e9fc4" +git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.10.4+0" +version = "2.11.5+0" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]