From db447623edb045478a3e8aa22d1c69d2ec8ed92d Mon Sep 17 00:00:00 2001 From: Charles Kawczynski Date: Mon, 9 Oct 2023 13:32:36 -0700 Subject: [PATCH 1/2] Update BandedMatrices compat --- Project.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Project.toml b/Project.toml index 541a293e88..226f93f627 100644 --- a/Project.toml +++ b/Project.toml @@ -31,7 +31,7 @@ UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" [compat] Adapt = "3" -BandedMatrices = "0.17" +BandedMatrices = "0.17, 1" BlockArrays = "0.16" CUDA = "3, 4.2.0, 5" ClimaComms = "0.5" From d27a063a4ddea3c33c8b33f153866287166abf6d Mon Sep 17 00:00:00 2001 From: Charles Kawczynski Date: Mon, 9 Oct 2023 13:34:29 -0700 Subject: [PATCH 2/2] Update manifests --- .dev/Manifest.toml | 4 +- benchmarks/bickleyjet/Manifest.toml | 22 +++--- docs/Manifest.toml | 93 ++++++++++++----------- examples/Manifest.toml | 75 +++++++++--------- lib/ClimaCoreMakie/examples/Manifest.toml | 52 ++++++------- perf/Manifest.toml | 37 ++++----- 6 files changed, 147 insertions(+), 136 deletions(-) diff --git a/.dev/Manifest.toml b/.dev/Manifest.toml index 0dd8850a37..688d9a20f9 100644 --- a/.dev/Manifest.toml +++ b/.dev/Manifest.toml @@ -79,9 +79,9 @@ version = "0.21.4" [[deps.JuliaFormatter]] deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "Pkg", "PrecompileTools", "Tokenize"] -git-tree-sha1 = "c0ac2f93058fd148267154c42dd7dc79869f7923" +git-tree-sha1 = "80031f6e58b09b0de4553bf63d9a36ec5db57967" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.37" +version = "1.0.39" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] diff --git a/benchmarks/bickleyjet/Manifest.toml b/benchmarks/bickleyjet/Manifest.toml index 744a80044c..2b019d7eed 100644 --- a/benchmarks/bickleyjet/Manifest.toml +++ b/benchmarks/bickleyjet/Manifest.toml @@ -56,9 +56,9 @@ version = "7.4.11" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0d61921af2799487b80453a44abb57db7a0c1381" +git-tree-sha1 = "9a731850434825d183af39c6e6cd0a1c32dd7e20" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.1" +version = "1.4.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -81,9 +81,9 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "0b816941273b5b162be122a6c94d706e3b3125ca" +git-tree-sha1 = "8f32ba3789b29880901748dce28f7d5c1d4ae86a" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.38" +version = "1.1.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -144,9 +144,9 @@ version = "0.2.2" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "bfe5a693a11522d58392f742243f2b50dc27afd6" +git-tree-sha1 = "178a606891f82b6d734f0eadd5336b7aad44d5df" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.9.2+0" +version = "0.9.2+1" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -164,7 +164,7 @@ version = "0.5.4" deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] path = "../.." uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.10.51" +version = "0.10.52" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -752,9 +752,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "0d097476b6c381ab7906460ef1ef1638fbce1d91" +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.2" +version = "1.0.3" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1078,9 +1078,9 @@ version = "1.2.2" [[deps.RelocatableFolders]] deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" +version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] diff --git a/docs/Manifest.toml b/docs/Manifest.toml index ea3bd5f61b..7ced0c250c 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -91,9 +91,9 @@ version = "0.1.29" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0d61921af2799487b80453a44abb57db7a0c1381" +git-tree-sha1 = "9a731850434825d183af39c6e6cd0a1c32dd7e20" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.1" +version = "1.4.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -134,9 +134,9 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "0b816941273b5b162be122a6c94d706e3b3125ca" +git-tree-sha1 = "8f32ba3789b29880901748dce28f7d5c1d4ae86a" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.38" +version = "1.1.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -241,9 +241,9 @@ version = "0.2.2" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "bfe5a693a11522d58392f742243f2b50dc27afd6" +git-tree-sha1 = "178a606891f82b6d734f0eadd5336b7aad44d5df" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.9.2+0" +version = "0.9.2+1" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -273,7 +273,7 @@ version = "0.5.4" deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] path = ".." uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.10.51" +version = "0.10.52" [[deps.ClimaCoreMakie]] deps = ["ClimaCore", "Makie"] @@ -468,9 +468,9 @@ version = "1.9.1" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9" +git-tree-sha1 = "d5a64797f46c37ea59da9e4dcc86b208cb150182" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.4" +version = "6.133.0" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" @@ -510,12 +510,13 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9" +git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.9" -weakdeps = ["SparseArrays"] +version = "0.10.10" +weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] @@ -981,9 +982,9 @@ uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" version = "1.0.0" [[deps.Inflate]] -git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" +git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.3" +version = "0.1.4" [[deps.InlineStrings]] deps = ["Parsers"] @@ -1300,10 +1301,10 @@ uuid = "9b3f67b0-2d00-526e-9884-9e4938f8fb88" version = "0.1.12" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "ba01f7a97d3d8bd711b2c00a8a68c887d8a85c9d" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "435ab14ca589757a0feae6e3e347bc37addda42d" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.8.1" +version = "2.9.2" [deps.LinearSolve.extensions] LinearSolveBlockDiagonalsExt = "BlockDiagonals" @@ -1313,7 +1314,6 @@ version = "2.8.1" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" - LinearSolveMKLExt = "MKL_jll" LinearSolveMetalExt = "Metal" LinearSolvePardisoExt = "Pardiso" @@ -1325,7 +1325,6 @@ version = "2.8.1" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" - MKL_jll = "856f044c-d86e-5d09-b602-aeab76dc8ba7" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" @@ -1356,9 +1355,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "0d097476b6c381ab7906460ef1ef1638fbce1d91" +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.2" +version = "1.0.3" [[deps.LoopVectorization]] deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] @@ -1409,15 +1408,15 @@ version = "0.5.11" [[deps.Makie]] deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "Match", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Setfield", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "cf10f4b9d09da50f124ab7bcb530e57f700328f0" +git-tree-sha1 = "1d16d20279a145119899b4205258332f0fbeaa94" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.19.10" +version = "0.19.11" [[deps.MakieCore]] -deps = ["Observables"] -git-tree-sha1 = "17d51182db2667962bc7e1d18b74881d0d0adbe6" +deps = ["Observables", "REPL"] +git-tree-sha1 = "a94bf3fef9c690a2a4ac1d09d86a59ab89c7f8e4" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.6.7" +version = "0.6.8" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1435,9 +1434,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MarkdownAST]] deps = ["AbstractTrees", "Markdown"] -git-tree-sha1 = "e8513266815200c0c8f522d6d44ffb5e9b366ae4" +git-tree-sha1 = "465a70f0fc7d443a00dcdc3267a497397b8a3899" uuid = "d0879d2d-cac2-40c8-9cee-1863dc0c7391" -version = "0.1.1" +version = "0.1.2" [[deps.Match]] git-tree-sha1 = "1d9bc5c1a6e7ee24effb93f175c9342f9154d97f" @@ -1560,9 +1559,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "7032be911404fe667e2a7ccd464ba5f2532797f2" +git-tree-sha1 = "445a7ba86794e1f8ee9da3b3b7becf284e2625fd" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "2.0.1" +version = "2.1.0" [[deps.Observables]] git-tree-sha1 = "6862738f9796b3edc1c09d0890afce4eca9e7e93" @@ -1635,9 +1634,9 @@ version = "0.5.5+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "963b004d15216f8129f6c0f7d187efa136570be0" +git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.7" +version = "1.7.8" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1652,9 +1651,9 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "16d4feaf7e17ac63cb6bb742b0a4dfd50d1ef458" +git-tree-sha1 = "def999a7447854f0e9ca9fdda235e04a65916b76" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.57.0" +version = "6.58.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1663,9 +1662,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "b7c4f29f93b548caa58f703580f4d79ab753c8ac" +git-tree-sha1 = "fcf8fd477bd7f33cb8dbb1243653fb0d415c256c" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.21" +version = "0.11.25" [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] @@ -1964,9 +1963,9 @@ version = "0.1.0" [[deps.RelocatableFolders]] deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" +version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] @@ -2026,14 +2025,20 @@ version = "0.6.39" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367" +git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.0.7" +version = "2.4.0" [deps.SciMLBase.extensions] - ZygoteExt = "Zygote" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLNLSolve]] @@ -2174,10 +2179,10 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "42d131931906bf4f0af97a7113c8456d0a8aff9d" +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "336fd944a1bbb8873bfa8171387608ca93317d68" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.6.0" +version = "2.8.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" diff --git a/examples/Manifest.toml b/examples/Manifest.toml index 9f5de432e6..8dd596a1b6 100644 --- a/examples/Manifest.toml +++ b/examples/Manifest.toml @@ -86,9 +86,9 @@ version = "0.1.29" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0d61921af2799487b80453a44abb57db7a0c1381" +git-tree-sha1 = "9a731850434825d183af39c6e6cd0a1c32dd7e20" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.1" +version = "1.4.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -111,9 +111,9 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "0b816941273b5b162be122a6c94d706e3b3125ca" +git-tree-sha1 = "8f32ba3789b29880901748dce28f7d5c1d4ae86a" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.38" +version = "1.1.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -211,9 +211,9 @@ version = "0.2.2" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "bfe5a693a11522d58392f742243f2b50dc27afd6" +git-tree-sha1 = "178a606891f82b6d734f0eadd5336b7aad44d5df" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.9.2+0" +version = "0.9.2+1" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -237,7 +237,7 @@ version = "0.5.4" deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] path = ".." uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.10.51" +version = "0.10.52" [[deps.ClimaCorePlots]] deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"] @@ -259,9 +259,9 @@ version = "0.7.2" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "1b437bf71f2e35925e957715361bcfa60f68351a" +git-tree-sha1 = "0294e5f032a1d578094431082600e864eb8554cf" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.10" +version = "0.7.14" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -429,9 +429,9 @@ version = "1.9.1" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9" +git-tree-sha1 = "d5a64797f46c37ea59da9e4dcc86b208cb150182" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.4" +version = "6.133.0" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" @@ -481,12 +481,13 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9" +git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.9" -weakdeps = ["SparseArrays"] +version = "0.10.10" +weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] @@ -809,9 +810,9 @@ uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" [[deps.Inflate]] -git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" +git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.3" +version = "0.1.4" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" @@ -1089,10 +1090,10 @@ uuid = "5c8ed15e-5a4c-59e4-a42b-c7e8811fb125" version = "2.5.2" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "ba01f7a97d3d8bd711b2c00a8a68c887d8a85c9d" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "EnzymeCore", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "435ab14ca589757a0feae6e3e347bc37addda42d" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.8.1" +version = "2.9.2" [deps.LinearSolve.extensions] LinearSolveBlockDiagonalsExt = "BlockDiagonals" @@ -1102,7 +1103,6 @@ version = "2.8.1" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" - LinearSolveMKLExt = "MKL_jll" LinearSolveMetalExt = "Metal" LinearSolvePardisoExt = "Pardiso" @@ -1114,7 +1114,6 @@ version = "2.8.1" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" - MKL_jll = "856f044c-d86e-5d09-b602-aeab76dc8ba7" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" @@ -1139,9 +1138,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "0d097476b6c381ab7906460ef1ef1638fbce1d91" +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.2" +version = "1.0.3" [[deps.LoopVectorization]] deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] @@ -1293,9 +1292,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "7032be911404fe667e2a7ccd464ba5f2532797f2" +git-tree-sha1 = "445a7ba86794e1f8ee9da3b3b7becf284e2625fd" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "2.0.1" +version = "2.1.0" [[deps.OffsetArrays]] deps = ["Adapt"] @@ -1362,9 +1361,9 @@ version = "1.6.2" [[deps.OrdinaryDiffEq]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "16d4feaf7e17ac63cb6bb742b0a4dfd50d1ef458" +git-tree-sha1 = "def999a7447854f0e9ca9fdda235e04a65916b76" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.57.0" +version = "6.58.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1588,9 +1587,9 @@ version = "0.1.2" [[deps.RelocatableFolders]] deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" +version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] @@ -1627,14 +1626,20 @@ version = "0.6.39" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367" +git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.0.7" +version = "2.4.0" [deps.SciMLBase.extensions] - ZygoteExt = "Zygote" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLNLSolve]] @@ -1728,10 +1733,10 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "42d131931906bf4f0af97a7113c8456d0a8aff9d" +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "336fd944a1bbb8873bfa8171387608ca93317d68" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.6.0" +version = "2.8.0" [deps.SparseDiffTools.extensions] SparseDiffToolsEnzymeExt = "Enzyme" diff --git a/lib/ClimaCoreMakie/examples/Manifest.toml b/lib/ClimaCoreMakie/examples/Manifest.toml index 0f815f6fc5..dea53eee6e 100644 --- a/lib/ClimaCoreMakie/examples/Manifest.toml +++ b/lib/ClimaCoreMakie/examples/Manifest.toml @@ -69,9 +69,9 @@ version = "7.4.11" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "0d61921af2799487b80453a44abb57db7a0c1381" +git-tree-sha1 = "9a731850434825d183af39c6e6cd0a1c32dd7e20" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.4.1" +version = "1.4.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -112,9 +112,9 @@ version = "0.4.2" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] -git-tree-sha1 = "0b816941273b5b162be122a6c94d706e3b3125ca" +git-tree-sha1 = "8f32ba3789b29880901748dce28f7d5c1d4ae86a" uuid = "aae01518-5342-5314-be14-df237901396f" -version = "0.17.38" +version = "1.1.0" weakdeps = ["SparseArrays"] [deps.BandedMatrices.extensions] @@ -184,9 +184,9 @@ version = "0.2.2" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "bfe5a693a11522d58392f742243f2b50dc27afd6" +git-tree-sha1 = "178a606891f82b6d734f0eadd5336b7aad44d5df" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.9.2+0" +version = "0.9.2+1" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -216,7 +216,7 @@ version = "0.5.4" deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] path = "../../.." uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.10.51" +version = "0.10.52" [[deps.ClimaCoreMakie]] deps = ["ClimaCore", "Makie"] @@ -595,9 +595,9 @@ version = "3.3.8+0" [[deps.GLMakie]] deps = ["ColorTypes", "Colors", "FileIO", "FixedPointNumbers", "FreeTypeAbstraction", "GLFW", "GeometryBasics", "LinearAlgebra", "Makie", "Markdown", "MeshIO", "ModernGL", "Observables", "PrecompileTools", "Printf", "ShaderAbstractions", "StaticArrays"] -git-tree-sha1 = "d7fe46f077c850f221c1f5b7b746a63c7e82b6b3" +git-tree-sha1 = "b46b637cf3e1945354e77c016f867198b829d2f6" uuid = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a" -version = "0.8.10" +version = "0.8.11" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] @@ -791,9 +791,9 @@ uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" version = "1.0.0" [[deps.Inflate]] -git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" +git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.3" +version = "0.1.4" [[deps.InlineStrings]] deps = ["Parsers"] @@ -1087,9 +1087,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "0d097476b6c381ab7906460ef1ef1638fbce1d91" +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.2" +version = "1.0.3" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] @@ -1137,15 +1137,15 @@ version = "0.5.11" [[deps.Makie]] deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "Contour", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FixedPointNumbers", "Formatting", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageIO", "InteractiveUtils", "IntervalSets", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "MakieCore", "Markdown", "Match", "MathTeXEngine", "Observables", "OffsetArrays", "Packing", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Setfield", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "StableHashTraits", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun"] -git-tree-sha1 = "cf10f4b9d09da50f124ab7bcb530e57f700328f0" +git-tree-sha1 = "1d16d20279a145119899b4205258332f0fbeaa94" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.19.10" +version = "0.19.11" [[deps.MakieCore]] -deps = ["Observables"] -git-tree-sha1 = "17d51182db2667962bc7e1d18b74881d0d0adbe6" +deps = ["Observables", "REPL"] +git-tree-sha1 = "a94bf3fef9c690a2a4ac1d09d86a59ab89c7f8e4" uuid = "20f20a25-4f0e-4fdf-b5d1-57303727442b" -version = "0.6.7" +version = "0.6.8" [[deps.MappedArrays]] git-tree-sha1 = "2dab0221fe2b0f2cb6754eaa743cc266339f527e" @@ -1330,9 +1330,9 @@ version = "0.5.5+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "963b004d15216f8129f6c0f7d187efa136570be0" +git-tree-sha1 = "01f85d9269b13fedc61e63cc72ee2213565f7a72" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.7" +version = "1.7.8" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1352,9 +1352,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "b7c4f29f93b548caa58f703580f4d79ab753c8ac" +git-tree-sha1 = "fcf8fd477bd7f33cb8dbb1243653fb0d415c256c" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.21" +version = "0.11.25" [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] @@ -1580,9 +1580,9 @@ version = "1.2.2" [[deps.RelocatableFolders]] deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" +version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] @@ -1961,9 +1961,9 @@ version = "1.3.0" [[deps.WGLMakie]] deps = ["Colors", "FileIO", "FreeTypeAbstraction", "GeometryBasics", "Hyperscript", "JSServe", "LinearAlgebra", "Makie", "Observables", "PNGFiles", "PrecompileTools", "RelocatableFolders", "ShaderAbstractions", "StaticArrays"] -git-tree-sha1 = "8a430666e4df430efe88a44f51eaca25f2dd293f" +git-tree-sha1 = "9144b1c6a99bb3a55d056afc5f007465668241bf" uuid = "276b4fcb-3e11-5398-bf8b-a0c2d153d008" -version = "0.8.14" +version = "0.8.15" [[deps.WidgetsBase]] deps = ["Observables"] diff --git a/perf/Manifest.toml b/perf/Manifest.toml index eccbaa2dfe..1a14eb5081 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -190,9 +190,9 @@ version = "0.2.2" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "bfe5a693a11522d58392f742243f2b50dc27afd6" +git-tree-sha1 = "178a606891f82b6d734f0eadd5336b7aad44d5df" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.9.2+0" +version = "0.9.2+1" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -216,7 +216,7 @@ version = "0.5.4" deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] path = ".." uuid = "d414da3d-4745-48bb-8d80-42e94e092884" -version = "0.10.51" +version = "0.10.52" [[deps.ClimaCorePlots]] deps = ["ClimaCore", "RecipesBase", "StaticArrays", "TriplotBase"] @@ -238,9 +238,9 @@ version = "0.7.2" [[deps.ClimaTimeSteppers]] deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "1b437bf71f2e35925e957715361bcfa60f68351a" +git-tree-sha1 = "0294e5f032a1d578094431082600e864eb8554cf" uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.10" +version = "0.7.14" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -250,9 +250,9 @@ version = "0.1.12" [[deps.CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] -git-tree-sha1 = "a1296f0fe01a4c3f9bf0dc2934efbf4416f5db31" +git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" -version = "1.3.4" +version = "1.3.5" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -471,12 +471,13 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9" +git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.9" -weakdeps = ["SparseArrays"] +version = "0.10.10" +weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] @@ -813,9 +814,9 @@ uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" version = "1.0.0" [[deps.Inflate]] -git-tree-sha1 = "5cd07aab533df5170988219191dfad0519391428" +git-tree-sha1 = "ea8031dea4aff6bd41f1df8f2fdfb25b33626381" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.3" +version = "0.1.4" [[deps.InlineStrings]] deps = ["Parsers"] @@ -866,9 +867,9 @@ version = "1.0.0" [[deps.JET]] deps = ["InteractiveUtils", "JuliaInterpreter", "LoweredCodeUtils", "MacroTools", "Pkg", "PrecompileTools", "Preferences", "Revise", "Test"] -git-tree-sha1 = "3d3ddcbf8cd3aeeb051df70c563ec33d23112722" +git-tree-sha1 = "cafbe8e8452ecbb5187101347db682a3b9466164" uuid = "c3a54625-cd67-489e-a8e7-0a5a0ff4e31b" -version = "0.8.14" +version = "0.8.15" [[deps.JLD2]] deps = ["FileIO", "MacroTools", "Mmap", "OrderedCollections", "Pkg", "Printf", "Reexport", "Requires", "TranscodingStreams", "UUIDs"] @@ -1167,9 +1168,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "0d097476b6c381ab7906460ef1ef1638fbce1d91" +git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.2" +version = "1.0.3" [[deps.LoopVectorization]] deps = ["ArrayInterface", "ArrayInterfaceCore", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] @@ -1662,9 +1663,9 @@ version = "1.2.2" [[deps.RelocatableFolders]] deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" +version = "1.0.1" [[deps.ReportMetrics]] deps = ["Coverage", "Pkg", "PrettyTables", "SnoopCompile"]