diff --git a/.buildkite/longruns_gpu/pipeline.yml b/.buildkite/longruns_gpu/pipeline.yml index fb0e4bfb2a..7f6808dfea 100644 --- a/.buildkite/longruns_gpu/pipeline.yml +++ b/.buildkite/longruns_gpu/pipeline.yml @@ -4,15 +4,14 @@ agents: modules: julia/1.10.0 cuda/julia-pref openmpi/4.1.5-mpitrampoline nsight-systems/2024.2.1 env: - JULIA_CUDA_MEMORY_POOL: none JULIA_MPI_HAS_CUDA: "true" JULIA_NVTX_CALLBACKS: gc JULIA_MAX_NUM_PRECOMPILE_FILES: 100 OPENBLAS_NUM_THREADS: 1 OMPI_MCA_opal_warn_on_missing_libcuda: 0 SLURM_KILL_BAD_EXIT: 1 - SLURM_GPU_BIND: none # https://github.com/open-mpi/ompi/issues/11949#issuecomment-1737712291 - CONFIG_PATH: "config/longrun_configs" + SLURM_GRES_FLAGS: "allow-task-sharing" + CONFIG_PATH: "config/model_configs/" CLIMAATMOS_GC_NSTEPS: 10 timeout_in_minutes: 1440 @@ -22,6 +21,8 @@ steps: key: "init_gpu_env" command: - echo "--- Instantiate examples" + - "julia --project=examples -e 'using Pkg; Pkg.develop(;path=\".\"); Pkg.add(url = \"https://github.com/CLiMA/ClimaTimeSteppers.jl\", rev = \"gb/rosenbrock\");'" + - "julia --project=examples -e 'using Pkg; Pkg.develop(;path=\".\"); Pkg.add(url = \"https://github.com/CLiMA/ClimaCore.jl\", rev = \"as/covar-deriv\");'" - julia --project=examples -e 'using Pkg; Pkg.instantiate(;verbose=true)' - julia --project=examples -e 'using Pkg; Pkg.precompile()' - julia --project=examples -e 'using CUDA; CUDA.precompile_runtime()' @@ -39,178 +40,17 @@ steps: - wait - - group: "helem 30 dycore" + - group: "test les" steps: - - label: ":computer: hydrostatic balance (ρe_tot)" + - label: ":computer: dycoms" command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME + - julia --threads=3 --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME artifact_paths: "$$JOB_NAME/output_active/*" agents: - slurm_gpus: 1 - slurm_time: 12:00:00 + slurm_gpus_per_task: 1 + slurm_cpus_per_task: 4 + slurm_ntasks: 4 + slurm_exclusive: env: - JOB_NAME: "longrun_sphere_hydrostatic_balance_rhoe" - - - label: ":computer: dry baroclinic wave" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "longrun_bw_rhoe_highres" - - - label: ":computer: baroclinic wave equilmoist" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "longrun_bw_rhoe_equil_highres" - - - label: ":computer: dry held-suarez" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "longrun_hs_rhoe_dry_55km_nz63" - - - label: ":computer: held-suarez, equilmoist" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "longrun_hs_rhoe_equil_55km_nz63_0M" - - - label: ":computer: held-suarez equilmoist + deep-atmosphere eqns" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - env: - CLIMACORE_DISTRIBUTED: "MPI" - JOB_NAME: "longrun_hs_rhoe_equil_55km_nz63_0M_deepatmos" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - - - group: "helem 16 aquaplanet" - steps: - - - label: ":computer: aquaplanet equilmoist gray radiation + 0M microphysics" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - env: - CLIMACORE_DISTRIBUTED: "MPI" - JOB_NAME: "longrun_aquaplanet_rhoe_equil_55km_nz63_gray_0M" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - - - label: ":computer: aquaplanet equilmoist clearsky radiation + 0M microphysics" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "longrun_aquaplanet_rhoe_equil_55km_nz63_clearsky_0M" - - - label: ":computer: aquaplanet equilmoist clearsky radiation + diagnostic edmf + 0M microphysics" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "longrun_aquaplanet_rhoe_equil_55km_nz63_clearsky_diagedmf_0M" - - - label: ":computer: aquaplanet equilmoist allsky radiation + diagnostic edmf + 0M microphysics" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "longrun_aquaplanet_rhoe_equil_55km_nz63_allsky_diagedmf_0M" - - - label: ":computer: aquaplanet equilmoist clearsky radiation + 0M microphysics + earth topography" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "longrun_aquaplanet_rhoe_equil_55km_nz63_clearsky_0M_earth" - - - label: ":computer: aquaplanet equilmoist clearsky radiation + 0M microphysics + earth topography (SLEVE)" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 6:00:00 - env: - JOB_NAME: "longrun_aquaplanet_rhoe_equil_55km_nz63_clearsky_0M_earth_sleve" - - - label: ":umbrella: aquaplanet equilmoist clearsky radiation + 1M microphysics" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 6:00:00 - env: - JOB_NAME: "longrun_aquaplanet_clearsky_1M" - - - label: ":computer: aquaplanet equilmoist clearsky radiation + time-varying insolation + 0M microphysics + slab ocean" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "longrun_aquaplanet_rhoe_equil_55km_nz63_clearsky_tvinsol_0M_slabocean" - - - group: "DYAMOND" - - steps: - - - label: ":computer: aquaplanet dyamond" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "longrun_aquaplanet_dyamond" - - - group: "atmos-only coupler runs" - - steps: - - - label: ":computer: amip target diagnostic edmf" - command: - - srun julia --color=yes --project=examples examples/hybrid/driver.jl --config_file $CONFIG_PATH/$$JOB_NAME.yml --job_id $$JOB_NAME - artifact_paths: "$$JOB_NAME/output_active/*" - agents: - slurm_gpus: 1 - slurm_time: 12:00:00 - env: - JOB_NAME: "amip_target_diagedmf" + JOB_NAME: "les_dycoms_box" diff --git a/.buildkite/pipeline.yml b/.buildkite/pipeline.yml index 03927d7dba..831d54a76e 100644 --- a/.buildkite/pipeline.yml +++ b/.buildkite/pipeline.yml @@ -29,12 +29,14 @@ steps: - "julia --project -e 'using Pkg; Pkg.status()'" - echo "--- Instantiate examples" + - "julia --project=examples -e 'using Pkg; Pkg.develop(;path=\".\"); Pkg.add(url = \"https://github.com/CLiMA/ClimaTimeSteppers.jl\", rev = \"gb/rosenbrock\");'" - "julia --project=examples -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - "julia --project=examples -e 'using Pkg; Pkg.precompile()'" - "julia --project=examples -e 'using CUDA; CUDA.precompile_runtime()'" - "julia --project=examples -e 'using Pkg; Pkg.status()'" - echo "--- Instantiate perf" + - "julia --project=perf -e 'using Pkg; Pkg.develop(;path=\".\"); Pkg.add(url = \"https://github.com/CLiMA/ClimaTimeSteppers.jl\", rev = \"gb/rosenbrock\");'" - "julia --project=perf -e 'using Pkg; Pkg.instantiate(;verbose=true)'" - "julia --project=perf -e 'using Pkg; Pkg.precompile()'" - "julia --project=perf -e 'using Pkg; Pkg.status()'" diff --git a/config/default_configs/default_config.yml b/config/default_configs/default_config.yml index 5f77704b5b..c95b5ffac6 100644 --- a/config/default_configs/default_config.yml +++ b/config/default_configs/default_config.yml @@ -138,7 +138,7 @@ vert_diff: value: "false" hyperdiff: help: "Hyperdiffusion [`ClimaHyperdiffusion` (or `true`; default), `none` (or `false`)]" - value: "ClimaHyperdiffusion" + value: "CAM_SE" bubble: help: "Enable bubble correction for more accurate surface areas" value: true @@ -196,6 +196,13 @@ perf_summary: viscous_sponge: help: "Viscous sponge [`true`, `false` (default)]" value: false +smagorinsky_lilly: + value: false +c_smag: + value: 0.2 +job_id: + help: "Uniquely identifying string for a particular job" + value: ~ tracer_upwinding: help: "Tracer upwinding mode [`none` (default), `first_order` , `third_order`, `boris_book`, `zalesak`]" value: none diff --git a/config/model_configs/box_density_current_test.yml b/config/model_configs/box_density_current_test.yml index 456fc31c1c..1493cddc12 100644 --- a/config/model_configs/box_density_current_test.yml +++ b/config/model_configs/box_density_current_test.yml @@ -1,19 +1,21 @@ +job_id: "box_density_current_test" dt_save_state_to_disk: "10secs" initial_condition: "DryDensityCurrentProfile" x_max: 51200.0 z_elem: 45 -dt: "0.1secs" -t_end: "10.0secs" +dt: "0.3secs" +t_end: "1000secs" discrete_hydrostatic_balance: true -y_max: 6400.0 -y_elem: 15 +hyperdiff: "false" +y_max: 51200.0 +y_elem: 45 z_stretch: false x_elem: 45 -ode_algo: "SSP33ShuOsher" config: "box" -vorticity_hyperdiffusion_coefficient: 0.6 -scalar_hyperdiffusion_coefficient: 0.6 +hyperdiff: "true" z_max: 6400.0 +smagorinsky_lilly: true +c_smag: 0.25 diagnostics: - - short_name: thetaa - period: 10secs + - short_name: [thetaa, wa, ua, ta, va, hfes, rhoa, rv, ha] + period: 30secs diff --git a/config/model_configs/les_bomex_box.yml b/config/model_configs/les_bomex_box.yml new file mode 100644 index 0000000000..ae282a1be1 --- /dev/null +++ b/config/model_configs/les_bomex_box.yml @@ -0,0 +1,36 @@ +job_id: "les_bomex_box" +initial_condition: "Bomex" +edmf_coriolis: "Bomex" +subsidence: "Bomex" +ls_adv: "Bomex" +surface_setup: "Bomex" +moist: "equil" +config: "box" +hyperdiff: "true" +implicit_diffusion: false +precip_model: "1M" +vorticity_hyperdiffusion_coefficient: 0.01 +scalar_hyperdiffusion_coefficient: 0.01 +smagorinsky_lilly: true +c_smag: 0.17 +x_max: 6.4e3 +y_max: 6.4e3 +z_max: 4.5e3 +x_elem: 16 +y_elem: 16 +z_elem: 75 +z_stretch: false +dt: "0.10secs" +output_default_diagnostics: false +t_end: "21600secs" +dt_save_state_to_disk: "30mins" +rayleigh_sponge: true +toml: [toml/bomex_box_rhoe.toml] +restart_file: "./restart/bomex/Micro1M_day0.0_Prod.hdf5" +netcdf_interpolation_num_points: [40, 40, 80] +diagnostics: + - short_name: [ts, ta, thetaa, ha, pfull, rhoa, ua, va, wa, hur, hus, cl, clw, cli, hussfc, evspsbl, kvis] + period: 10mins + - short_name: [ts, ta, thetaa, ha, pfull, rhoa, ua, va, wa, hur, hus, cl, clw, cli, hussfc, evspsbl, kvis] + reduction: "average" + period: 60mins diff --git a/config/model_configs/les_dycoms_box.yml b/config/model_configs/les_dycoms_box.yml new file mode 100644 index 0000000000..822c839c58 --- /dev/null +++ b/config/model_configs/les_dycoms_box.yml @@ -0,0 +1,36 @@ +job_id: "les_dycoms_box" +perturb_initstate: true +initial_condition: DYCOMS_RF01 +edmf_coriolis: DYCOMS_RF01 +subsidence: DYCOMS +rad: DYCOMS_RF01 +surface_setup: DYCOMS_RF01 +moist: "equil" +config: box +hyperdiff: "true" +vorticity_hyperdiffusion_coefficient: 0.01 +scalar_hyperdiffusion_coefficient: 0.01 +ode_algo: "SSPKnoth" +precip_model: "0M" +x_max: 500.0 +y_max: 500.0 +z_max: 1.5e3 +x_elem: 5 +y_elem: 5 +z_elem: 150 +z_stretch: false +smagorinsky_lilly: true +c_smag: 0.20 +dt: "0.05secs" +t_end: "14400secs" +dt_save_state_to_disk: "30mins" +restart_file: "/home/asridhar/Codes/ClimaAtmos.jl/restart/dycoms/test_restart.hdf5" +rayleigh_sponge: true +toml: [toml/dycoms_box_rhoe.toml] +netcdf_interpolation_num_points: [30,30,75] +diagnostics: + - short_name: [ts, ta, thetaa, ha, pfull, rhoa, ua, va, wa, hur, hus, cl, clw, cli, hussfc, evspsbl, kvis, hfes] + period: 10mins + - short_name: [ts, ta, thetaa, ha, pfull, rhoa, ua, va, wa, hur, hus, cl, clw, cli, hussfc, evspsbl, kvis, hfes] + reduction: "average" + period: 60mins diff --git a/config/model_configs/les_gabls_box.yml b/config/model_configs/les_gabls_box.yml new file mode 100644 index 0000000000..e10e6e870f --- /dev/null +++ b/config/model_configs/les_gabls_box.yml @@ -0,0 +1,26 @@ +job_id: "les_gabls_box" +edmf_coriolis: GABLS +initial_condition: GABLS +surface_setup: GABLS +implicit_diffusion: false +moist: "equil" +precip_model: "1M" +config: "box" +hyperdiff: "false" +x_max: 1e3 +y_max: 1e3 +z_max: 500 +x_elem: 5 +y_elem: 5 +z_elem: 10 +z_stretch: false +dt: "0.10secs" +t_end: "100secs" +dt_save_state_to_disk: "30mins" +perturb_initstate: true +netcdf_output_at_levels: true +netcdf_interpolation_num_points: [20, 20, 20] +#restart_file: "restart/gabls/day0.0.hdf5" +diagnostics: + - short_name: [ts, ta, thetaa, ha, pfull, rhoa, ua, va, wa, hur, hus, cl, clw, cli, hussfc, evspsbl] + period: 10secs diff --git a/examples/Manifest.toml b/examples/Manifest.toml deleted file mode 100644 index 97770cb4ce..0000000000 --- a/examples/Manifest.toml +++ /dev/null @@ -1,2649 +0,0 @@ -# This file is machine-generated - editing it directly is not advised - -julia_version = "1.10.3" -manifest_format = "2.0" -project_hash = "ee43add35e84bb5015e880c7d711d4c69c8fcaf2" - -[[deps.ADTypes]] -git-tree-sha1 = "daf26bbdec60d9ca1c0003b70f389d821ddb4224" -uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = 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-[[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" -uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" - -[[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" -uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" diff --git a/examples/hybrid/driver.jl b/examples/hybrid/driver.jl index a7cfb7b9e8..0b2a4d5540 100644 --- a/examples/hybrid/driver.jl +++ b/examples/hybrid/driver.jl @@ -8,6 +8,8 @@ import ClimaAtmos as CA import Random Random.seed!(1234) +import ClimaComms + if !(@isdefined config) (; config_file, job_id) = CA.commandline_kwargs() config = CA.AtmosConfig(config_file; job_id) @@ -25,7 +27,6 @@ import ClimaAtmos.InitialConditions as ICs using Statistics: mean import ClimaAtmos.Parameters as CAP import Thermodynamics as TD -import ClimaComms using SciMLBase using PrettyTables using JLD2 diff --git a/post_processing/ci_plots.jl b/post_processing/ci_plots.jl index 96500e37c3..7bcd03d49e 100644 --- a/post_processing/ci_plots.jl +++ b/post_processing/ci_plots.jl @@ -530,6 +530,7 @@ end function make_plots( ::Val{:box_density_current_test}, + ::Val{:box_rising_thermal_test}, output_paths::Vector{<:AbstractString}, ) simdirs = SimDir.(output_paths) diff --git a/regression_tests/ref_counter.jl b/regression_tests/ref_counter.jl index 01c5afd393..2d27c17683 100644 --- a/regression_tests/ref_counter.jl +++ b/regression_tests/ref_counter.jl @@ -1,4 +1,7 @@ -162 +163 + +# 163: +# - Moved to SSPKnoth # 162: # - Changed the order of operations in surface conditions calculation. @@ -16,13 +19,13 @@ # to be dependent on the surface area # 158: -# - Switched back the precipitation threshold defintion in the +# - Switched back the precipitation threshold definition in the # 0-moment scheme to specific humidity # 157: # - For the grid mean precipitation tendency in the 0-moment scheme: # - added limiting by q_tot/dt -# - switched the precipitation threshold defintion +# - switched the precipitation threshold definition # from specific humidity based to supersaturation based # 156: diff --git a/restart/bomex/Micro1M_day0.0_Prod.hdf5 b/restart/bomex/Micro1M_day0.0_Prod.hdf5 new file mode 100644 index 0000000000..7414b50883 Binary files /dev/null and b/restart/bomex/Micro1M_day0.0_Prod.hdf5 differ diff --git a/src/ClimaAtmos.jl b/src/ClimaAtmos.jl index 85d5545cec..4b0d57c62f 100644 --- a/src/ClimaAtmos.jl +++ b/src/ClimaAtmos.jl @@ -107,6 +107,7 @@ include( ) include(joinpath("parameterized_tendencies", "sponge", "rayleigh_sponge.jl")) include(joinpath("parameterized_tendencies", "sponge", "viscous_sponge.jl")) +include(joinpath("parameterized_tendencies", "smagorinsky_lilly.jl")) include(joinpath("prognostic_equations", "advection.jl")) include(joinpath("cache", "temporary_quantities.jl")) diff --git a/src/cache/cache.jl b/src/cache/cache.jl index 5e6d1da627..935bef42e1 100644 --- a/src/cache/cache.jl +++ b/src/cache/cache.jl @@ -16,6 +16,7 @@ struct AtmosCache{ DSS, RS, VS, + SL, PR, SUB, LSAD, @@ -79,6 +80,7 @@ struct AtmosCache{ """Additional parameters used by the various tendencies""" rayleigh_sponge::RS viscous_sponge::VS + smagorinsky_lilly::SL precipitation::PR subsidence::SUB large_scale_advection::LSAD @@ -224,6 +226,7 @@ function build_cache(Y, atmos, params, surface_setup, sim_info, aerosol_names) hyperdiff = hyperdiffusion_cache(Y, atmos) rayleigh_sponge = rayleigh_sponge_cache(Y, atmos) viscous_sponge = viscous_sponge_cache(Y, atmos) + smagorinsky_lilly = smagorinsky_lilly_cache(Y, atmos) precipitation = precipitation_cache(Y, atmos) subsidence = subsidence_cache(Y, atmos) large_scale_advection = large_scale_advection_cache(Y, atmos) @@ -253,6 +256,7 @@ function build_cache(Y, atmos, params, surface_setup, sim_info, aerosol_names) do_dss, rayleigh_sponge, viscous_sponge, + smagorinsky_lilly, precipitation, subsidence, large_scale_advection, diff --git a/src/cache/temporary_quantities.jl b/src/cache/temporary_quantities.jl index 49fafaa23f..fdde3fc3b3 100644 --- a/src/cache/temporary_quantities.jl +++ b/src/cache/temporary_quantities.jl @@ -50,6 +50,14 @@ function temporary_quantities(Y, atmos) typeof(UVW(FT(0), FT(0), FT(0)) * UVW(FT(0), FT(0), FT(0))'), face_space, ), # ᶠstrain_rate + ᶜtemp_strain = Fields.Field( + typeof(UVW(FT(0), FT(0), FT(0)) * UVW(FT(0), FT(0), FT(0))'), + center_space, + ), # ᶜstrain_rate + ᶠtemp_strain = Fields.Field( + typeof(UVW(FT(0), FT(0), FT(0)) * UVW(FT(0), FT(0), FT(0))'), + face_space, + ), # ᶠstrain_rate # TODO: Remove this hack sfc_temp_C3 = Fields.Field(C3{FT}, Spaces.level(face_space, half)), # ρ_flux_χ # Implicit solver cache: diff --git a/src/diagnostics/Diagnostics.jl b/src/diagnostics/Diagnostics.jl index 04d01941b0..9e3892d1db 100644 --- a/src/diagnostics/Diagnostics.jl +++ b/src/diagnostics/Diagnostics.jl @@ -34,6 +34,7 @@ import ..VerticalDiffusion import ..FriersonDiffusion # turbconv_model +import ..SmagorinskyLilly import ..PrognosticEDMFX import ..DiagnosticEDMFX diff --git a/src/diagnostics/diagnostic.jl b/src/diagnostics/diagnostic.jl index b03bb8e865..ce949bae8a 100644 --- a/src/diagnostics/diagnostic.jl +++ b/src/diagnostics/diagnostic.jl @@ -97,6 +97,7 @@ end include("core_diagnostics.jl") include("radiation_diagnostics.jl") include("edmfx_diagnostics.jl") +include("sgs_diagnostics.jl") # Default diagnostics and higher level interfaces include("default_diagnostics.jl") diff --git a/src/diagnostics/sgs_diagnostics.jl b/src/diagnostics/sgs_diagnostics.jl new file mode 100644 index 0000000000..f6ffdcdeaf --- /dev/null +++ b/src/diagnostics/sgs_diagnostics.jl @@ -0,0 +1,26 @@ +compute_kinematic_viscosity!(out, state, cache, time) = + compute_kinematic_viscosity!(out, state, cache, time, cache.atmos.smagorinsky_lilly) +compute_kinematic_viscosity!(_, _, _, _, sgs_model::SGS) where {SGS} = + error_diagnostic_variable("kinematic_viscosity", sgs_model) + +function compute_kinematic_viscosity!( + out, + state, + cache, + time, + sgs_model::SGS, +) where {SGS <: SmagorinskyLilly} + if isnothing(out) + return cache.smagorinsky_lilly.v_t + else + out .= cache.smagorinsky_lilly.v_t + end +end +add_diagnostic_variable!( + short_name = "kvis", + long_name = "Kinematic Viscosity", + standard_name = "kinematic_viscosity", + units = "m^2 s^-1", + comments = "Kinematic viscosity", + compute! = compute_kinematic_viscosity! +) diff --git a/src/initial_conditions/initial_conditions.jl b/src/initial_conditions/initial_conditions.jl index 87dced494b..1961e11cb3 100644 --- a/src/initial_conditions/initial_conditions.jl +++ b/src/initial_conditions/initial_conditions.jl @@ -72,7 +72,7 @@ function column_indefinite_integral( boundary_names = (:bottom, :top), ) z_mesh = Meshes.IntervalMesh(z_domain; nelems) - context = ClimaComms.SingletonCommsContext() + context = ClimaComms.SingletonCommsContext(ClimaComms.CPUSingleThreaded()) z_topology = Topologies.IntervalTopology(context, z_mesh) cspace = Spaces.CenterFiniteDifferenceSpace(z_topology) fspace = Spaces.FaceFiniteDifferenceSpace(z_topology) diff --git a/src/parameterized_tendencies/radiation/radiation.jl b/src/parameterized_tendencies/radiation/radiation.jl index 10f457e767..7f6f5f7cc1 100644 --- a/src/parameterized_tendencies/radiation/radiation.jl +++ b/src/parameterized_tendencies/radiation/radiation.jl @@ -275,18 +275,20 @@ function radiation_tendency!(Yₜ, Y, p, t, radiation_mode::RadiationDYCOMS_RF01 # Find the values of (z, ρ, q_tot) at the q_tot = 0.008 isoline, i.e., at # the level whose value of q_tot is closest to 0.008. - Operators.column_mapreduce!( - (z, ρ, q_tot) -> (; z, ρ, q_tot), - (nt1, nt2) -> - abs(nt1.q_tot - FT(0.008)) < abs(nt2.q_tot - FT(0.008)) ? nt1 : nt2, - isoline_z_ρ_q, - ᶜz, - Y.c.ρ, - ᶜspecific.q_tot, - ) + #Operators.column_mapreduce!( + # (z, ρ, q_tot) -> (; z, ρ, q_tot), + # (nt1, nt2) -> + # abs(nt1.q_tot - FT(0.008)) < abs(nt2.q_tot - FT(0.008)) ? nt1 : nt2, + # isoline_z_ρ_q, + # ᶜz, + # Y.c.ρ, + # ᶜspecific.q_tot, + #) - zi = isoline_z_ρ_q.z - ρi = isoline_z_ρ_q.ρ + zi = FT(800); + ρi = FT(1.13); + #zi = isoline_z_ρ_q.z + #ρi = isoline_z_ρ_q.ρ # TODO: According to the paper, we should remove the ifelse condition that # clips the third term to 0 below zi, and we should also replace cp_d with diff --git a/src/parameterized_tendencies/smagorinsky_lilly.jl b/src/parameterized_tendencies/smagorinsky_lilly.jl new file mode 100644 index 0000000000..daf57e9f39 --- /dev/null +++ b/src/parameterized_tendencies/smagorinsky_lilly.jl @@ -0,0 +1,197 @@ +##### +##### Smagornsky Lilly Diffusion +##### + +import ClimaCore.Fields as Fields +import ClimaCore.Operators as Operators +import LinearAlgebra as la +import ClimaCore: Geometry + +smagorinsky_lilly_cache(Y, atmos::AtmosModel) = + smagorinsky_lilly_cache(Y, atmos.smagorinsky_lilly) + +smagorinsky_lilly_cache(Y, ::Nothing) = (;) + +function smagorinsky_lilly_cache(Y, sl::SmagorinskyLilly) + # D = v/Pr, where v = (Cs * cbrt(J))^2 * sqrt(2*Sij*Sij). The cube root of the + # volume is the average length of the sides of the cell. + (; Cs) = sl + FT = eltype(Y) + h_space = Spaces.horizontal_space(axes(Y.c)) + Δ_filter = Spaces.node_horizontal_length_scale(h_space) + ᶜtemp_scalar_3 = zero(Fields.Field(Float32, axes(Y.c.ρ))) + v_t = ᶜtemp_scalar_3 + return (; v_t, Δ_filter) +end + +horizontal_smagorinsky_lilly_tendency!(Yₜ, Y, p, t, ::Nothing) = nothing +vertical_smagorinsky_lilly_tendency!(Yₜ, Y, p, t, ::Nothing) = nothing + +function horizontal_smagorinsky_lilly_tendency!(Yₜ, Y, p, t, sl::SmagorinskyLilly) + if !(hasproperty(p.precomputed, :ᶜspecific)) + throw(ErrorException("p does not have the property ᶜspecific.")) + end + + (; Cs) = sl + (; v_t, Δ_filter) = p.smagorinsky_lilly + (; ᶜu, ᶠu³) = p.precomputed + (;ᶜΦ) = p.core + + # Operators + FT = eltype(v_t) + grav = FT(9.81) + ᶜJ = Fields.local_geometry_field(Y.c).J + + ᶜS = zero(p.scratch.ᶜtemp_strain) + ᶠS = zero(p.scratch.ᶠtemp_strain) + ᶜϵ = zero(p.scratch.ᶜtemp_UVWxUVW) + ᶠϵ = zero(p.scratch.ᶠtemp_UVWxUVW) + ᶠfb = p.scratch.ᶠtemp_scalar + ᶜz = Fields.coordinate_field(Y.c).z + ᶠz = Fields.coordinate_field(Y.f).z + + localu = @. Geometry.UVWVector(ᶜu) + ᶠu = @. Geometry.UVWVector(ᶠwinterp(ᶜJ * Y.c.ρ, Y.c.uₕ)) + Geometry.UVWVector(Y.f.u₃) + @. ᶠS = Geometry.project(Geometry.UVWAxis(), gradₕ(ᶠu)) + @. ᶜS = Geometry.project(Geometry.UVWAxis(), gradₕ(localu)) + CA.compute_strain_rate_face!(ᶠϵ, Geometry.Covariant123Vector.(localu)) + CA.compute_strain_rate_center!(ᶜϵ, Geometry.Covariant123Vector.(ᶠu)) + @. ᶠS = (ᶠS + adjoint(ᶠS)) + ᶠϵ + @. ᶜS = (ᶜS + adjoint(ᶜS)) + ᶜϵ + + (; sfc_conditions, ᶜts) = p.precomputed + thermo_params = CAP.thermodynamics_params(p.params) + ᶠts_sfc = sfc_conditions.ts + #θ_v = @. TD.virtual_pottemp(thermo_params, ᶜts) + #@. ᶠfb = (max(FT(0), 1 - 3*(grav / ᶠinterp(θ_v) * Geometry.WVector(ᶠgradᵥ(θ_v)).components.data.:1) / CA.norm_sqr(ᶠS)))^(1/4) + + ᶠρ = @. ᶠwinterp(ᶜJ, Y.c.ρ) + ᶠv_t = @. (Cs * Δ_filter)^2 * sqrt(2 * CA.norm_sqr(ᶠS)) #* ᶠfb + ᶜv_t = @. ᶜinterp(ᶠv_t) + ᶜD = @. FT(3) * ᶜv_t + + @. v_t = ᶜv_t + + @. Yₜ.c.uₕ += C12(wdivₕ(Y.c.ρ * ᶜv_t * ᶜS)) / Y.c.ρ + + @. Yₜ.f.u₃ += C3(wdivₕ(ᶠρ * ᶠv_t * ᶠS)) / ᶠρ + + # energy adjustment + (; ᶜspecific) = p.precomputed + + if :ρe_tot in propertynames(Yₜ.c) + (; ᶜh_tot) = p.precomputed + @. Yₜ.c.ρe_tot += wdivₕ(Y.c.ρ * ᶜD * gradₕ(ᶜh_tot)) + end + + # q_tot and other tracer adjustment (moisture affects mass terms + # as well) + for (ᶜρχₜ, ᶜχ, χ_name) in CA.matching_subfields(Yₜ.c, ᶜspecific) + χ_name == :e_tot && continue + @. ᶜρχₜ += wdivₕ(Y.c.ρ * ᶜD * gradₕ(ᶜχ)) + @. Yₜ.c.ρ += wdivₕ(Y.c.ρ * ᶜD * gradₕ(ᶜχ)) + end + +end + +function vertical_smagorinsky_lilly_tendency!(Yₜ, Y, p, t, sl::SmagorinskyLilly) + if !(hasproperty(p.precomputed, :ᶜspecific)) + throw(ErrorException("p does not have the property ᶜspecific.")) + end + (; Cs) = sl + (; v_t, Δ_filter) = p.smagorinsky_lilly + (; ᶜu, ᶠu³, sfc_conditions, ᶜspecific) = p.precomputed + (;ᶜΦ) = p.core + ᶠgradᵥ = Operators.GradientC2F() # apply BCs to ᶜdivᵥ, which wraps ᶠgradᵥ + + # Operators + FT = eltype(v_t) + ᶜJ = Fields.local_geometry_field(Y.c).J + + ᶜS = zero(p.scratch.ᶜtemp_strain) + ᶠS = zero(p.scratch.ᶠtemp_strain) + ᶜϵ = zero(p.scratch.ᶜtemp_UVWxUVW) + ᶠϵ = zero(p.scratch.ᶠtemp_UVWxUVW) + + ᶜz = Fields.coordinate_field(Y.c).z + ᶠz = Fields.coordinate_field(Y.f).z + + ᶠfb = p.scratch.ᶠtemp_scalar + grav = FT(9.81) + + localu = @. Geometry.UVWVector(ᶜu) + ᶠu = @. Geometry.UVWVector(ᶠwinterp(ᶜJ * Y.c.ρ, Y.c.uₕ)) + Geometry.UVWVector(Y.f.u₃) + @. ᶠS = Geometry.project(Geometry.UVWAxis(), gradₕ(ᶠu)) + @. ᶜS = Geometry.project(Geometry.UVWAxis(), gradₕ(localu)) + CA.compute_strain_rate_face!(ᶠϵ, ᶜu) + CA.compute_strain_rate_center!(ᶜϵ, Geometry.Covariant123Vector.(ᶠu)) + @. ᶠS = (ᶠS + adjoint(ᶠS)) + ᶠϵ + @. ᶜS = (ᶜS + adjoint(ᶜS)) + ᶜϵ + + (; sfc_conditions, ᶜts) = p.precomputed + ᶠts_sfc = sfc_conditions.ts + thermo_params = CAP.thermodynamics_params(p.params) + #θ_v = @. TD.virtual_pottemp(thermo_params, ᶜts) + #@. ᶠfb = (max(FT(0), 1 - 3*(grav / ᶠinterp(θ_v) * Geometry.WVector(ᶠgradᵥ(θ_v)).components.data.:1) / CA.norm_sqr(ᶠS)))^(1/4) + + ᶠρ = @. ᶠwinterp(ᶜJ, Y.c.ρ) + ᶠv_t = @. (Cs * Δ_filter)^2 * sqrt(2 * CA.norm_sqr(ᶠS)) #* ᶠfb + ᶜv_t = @. ᶜinterp(ᶠv_t) + ᶜD = @. FT(3) * ᶜv_t + + @. Yₜ.c.uₕ -= C12( + ᶜdivᵥ( + -2 * + ᶠinterp(Y.c.ρ) * + ᶠv_t * + ᶠS, + ) / Y.c.ρ, + ) + + # apply boundary condition for momentum flux + ᶜdivᵥ_uₕ = Operators.DivergenceF2C( + top = Operators.SetValue(C3(FT(0)) ⊗ C12(FT(0), FT(0))), + bottom = Operators.SetValue(sfc_conditions.ρ_flux_uₕ), + ) + @. Yₜ.c.uₕ -= ᶜdivᵥ_uₕ(-(FT(0) * ᶠgradᵥ(Y.c.uₕ))) / Y.c.ρ + + @. Yₜ.f.u₃ -= C3( + ᶠinterp(ᶜdivᵥ( + -2 * + ᶠinterp(Y.c.ρ) * + ᶠv_t * + ᶠS, + ) / Y.c.ρ), + ) + + # BC verified ✓ + (; ᶜh_tot) = p.precomputed + ᶜdivᵥ_ρe_tot = Operators.DivergenceF2C( + top = Operators.SetValue(C3(FT(0))), + bottom = Operators.SetValue(sfc_conditions.ρ_flux_h_tot), + ) + @. Yₜ.c.ρe_tot -= ᶜdivᵥ_ρe_tot( + -(ᶠinterp(Y.c.ρ) * + ᶠinterp(ᶜD) * + ᶠgradᵥ(ᶜh_tot)) + ) + + + ρ_flux_χ = zero(p.scratch.sfc_temp_C3) + for (ᶜρχₜ, ᶜχ, χ_name) in CA.matching_subfields(Yₜ.c, ᶜspecific) + χ_name == :e_tot && continue + if χ_name == :q_tot + @. ρ_flux_χ = sfc_conditions.ρ_flux_q_tot + else + @. ρ_flux_χ = C3(FT(0)) + end + ᶜdivᵥ_ρχ = Operators.DivergenceF2C( + top = Operators.SetValue(C3(FT(0))), + bottom = Operators.SetValue(ρ_flux_χ), + ) + @. ᶜρχₜ -= ᶜdivᵥ_ρχ(-(ᶠinterp(Y.c.ρ) * ᶠinterp(ᶜD) * ᶠgradᵥ(ᶜχ))) + if !(χ_name in (:q_rai, :q_sno)) + @. Yₜ.c.ρ -= ᶜdivᵥ_ρχ(-(ᶠinterp(Y.c.ρ) * ᶠinterp(ᶜD) * ᶠgradᵥ(ᶜχ))) + end + end +end diff --git a/src/prognostic_equations/implicit/implicit_solver.jl b/src/prognostic_equations/implicit/implicit_solver.jl index b3f2c7d955..2652726c76 100644 --- a/src/prognostic_equations/implicit/implicit_solver.jl +++ b/src/prognostic_equations/implicit/implicit_solver.jl @@ -372,7 +372,7 @@ NVTX.@annotate function ldiv!( ) MatrixFields.field_matrix_solve!(A.solver, x, A.matrix, b) if A.transform_flag - @. x *= A.dtγ_ref[] + @. x *= -A.dtγ_ref[] end end diff --git a/src/prognostic_equations/remaining_tendency.jl b/src/prognostic_equations/remaining_tendency.jl index 9043ed4cec..af4182f8bd 100644 --- a/src/prognostic_equations/remaining_tendency.jl +++ b/src/prognostic_equations/remaining_tendency.jl @@ -82,9 +82,13 @@ NVTX.@annotate function additional_tendency!(Yₜ, Y, p, t) # NOTE: All ρa tendencies should be applied before calling this function pressure_work_tendency!(Yₜ, Y, p, t, p.atmos.turbconv_model) + + horizontal_smagorinsky_lilly_tendency!(Yₜ, Y, p, t, p.atmos.smagorinsky_lilly) + vertical_smagorinsky_lilly_tendency!(Yₜ, Y, p, t, p.atmos.smagorinsky_lilly) # NOTE: This will zero out all momentum tendencies in the edmfx advection test # please DO NOT add additional velocity tendencies after this function + # Other SGS tendencies zero_velocity_tendency!(Yₜ, Y, p, t) # TODO: make bycolumn-able diff --git a/src/solver/model_getters.jl b/src/solver/model_getters.jl index 26de2ae86f..edd9e4d9d4 100644 --- a/src/solver/model_getters.jl +++ b/src/solver/model_getters.jl @@ -136,6 +136,17 @@ function get_viscous_sponge_model(parsed_args, params, ::Type{FT}) where {FT} end end +function get_smagorinsky_lilly_model(parsed_args, params, ::Type{FT}) where {FT} + is_model_on = parsed_args["smagorinsky_lilly"] + Cs = parsed_args["c_smag"] + @assert is_model_on in (true, false) + return if is_model_on == true + SmagorinskyLilly{FT}(; Cs) + else + nothing + end +end + function get_rayleigh_sponge_model(parsed_args, params, ::Type{FT}) where {FT} rs_name = parsed_args["rayleigh_sponge"] return if rs_name in ("false", false) diff --git a/src/solver/type_getters.jl b/src/solver/type_getters.jl index 1b9e4762b6..1400457236 100644 --- a/src/solver/type_getters.jl +++ b/src/solver/type_getters.jl @@ -89,6 +89,7 @@ function get_atmos(config::AtmosConfig, params) diff_mode = implicit_diffusion ? Implicit() : Explicit(), sgs_adv_mode = implicit_sgs_advection ? Implicit() : Explicit(), viscous_sponge = get_viscous_sponge_model(parsed_args, params, FT), + smagorinsky_lilly = get_smagorinsky_lilly_model(parsed_args, params, FT), rayleigh_sponge = get_rayleigh_sponge_model(parsed_args, params, FT), sfc_temperature = get_sfc_temperature_form(parsed_args), surface_model = get_surface_model(parsed_args), @@ -379,6 +380,7 @@ is_imex_CTS_algo_type(alg_or_tableau) = is_implicit_type(alg_or_tableau) = is_imex_CTS_algo_type(alg_or_tableau) is_imex_CTS_algo(::CTS.IMEXAlgorithm) = true +is_imex_CTS_algo(::CTS.RosenbrockAlgorithm) = true is_imex_CTS_algo(::SciMLBase.AbstractODEAlgorithm) = false is_implicit(ode_algo) = is_imex_CTS_algo(ode_algo) @@ -429,6 +431,13 @@ function ode_configuration(::Type{FT}, parsed_args) where {FT} ode_name = parsed_args["ode_algo"] alg_or_tableau = getproperty(CTS, Symbol(ode_name)) @info "Using ODE config: `$alg_or_tableau`" + if ode_name == "SSPKnoth" + return CTS.RosenbrockAlgorithm(CTS.tableau(CTS.SSPKnoth())) + end + + if ode_name == "SSPKnoth" + return CTS.RosenbrockAlgorithm(CTS.tableau(CTS.SSPKnoth(), FT)) + end if is_explicit_CTS_algo_type(alg_or_tableau) return CTS.ExplicitAlgorithm(alg_or_tableau()) diff --git a/src/solver/types.jl b/src/solver/types.jl index 66c4949d19..1d1d7a5b90 100644 --- a/src/solver/types.jl +++ b/src/solver/types.jl @@ -61,6 +61,11 @@ Base.@kwdef struct ViscousSponge{FT} <: AbstractSponge κ₂::FT end +abstract type AbstractEddyViscosityModel end +Base.@kwdef struct SmagorinskyLilly{FT} <: AbstractEddyViscosityModel + Cs::FT = 0.2 +end + Base.@kwdef struct RayleighSponge{FT} <: AbstractSponge zd::FT α_uₕ::FT @@ -351,6 +356,7 @@ Base.@kwdef struct AtmosModel{ DM, SAM, VS, + SL, RS, ST, SM, @@ -384,6 +390,7 @@ Base.@kwdef struct AtmosModel{ diff_mode::DM = nothing sgs_adv_mode::SAM = nothing viscous_sponge::VS = nothing + smagorinsky_lilly::SL = nothing rayleigh_sponge::RS = nothing sfc_temperature::ST = nothing surface_model::SM = nothing diff --git a/src/surface_conditions/surface_conditions.jl b/src/surface_conditions/surface_conditions.jl index b6df21cb4d..f36ac22042 100644 --- a/src/surface_conditions/surface_conditions.jl +++ b/src/surface_conditions/surface_conditions.jl @@ -418,7 +418,7 @@ vector_from_component(f₁, L::Geometry.LocalGeometry) = function tensor_from_components(f₁₃, f₂₃, L, n₃ = surface_normal(L)) xz = CT12(CT1(unit_basis_vector_data(CT1, L)), L) yz = CT12(CT2(unit_basis_vector_data(CT2, L)), L) - f = C12(f₁₃ * xz + f₂₃ * xz, L) + f = C12(f₁₃ * xz + f₂₃ * yz, L) return n₃ ⊗ f end diff --git a/test/parameterized_tendencies/les_closures/smagorinsky_lilly.jl b/test/parameterized_tendencies/les_closures/smagorinsky_lilly.jl new file mode 100644 index 0000000000..1b7a02c013 --- /dev/null +++ b/test/parameterized_tendencies/les_closures/smagorinsky_lilly.jl @@ -0,0 +1,73 @@ + +using Test +import ClimaAtmos as CA +import ClimaAtmos.Parameters as CAP +import ClimaCore as CC +import Thermodynamics as TD + +### Common Objects ### +@testset begin + "Smagorinsky Lilly function" + ### Boilerplate default integrator objects + config = CA.AtmosConfig( + Dict( + "initial_condition" => "DryDensityCurrentProfile", + "moist" => "dry", + "precip_model" => "0M", + "config" => "box", + "x_max" => π, + "y_max" => π, + "z_max" => 1.0, + "z_stretch" => false, + "output_default_diagnostics" => false + ), + ); + parsed_args = config.parsed_args; + simulation = CA.get_simulation(config); + (; integrator) = simulation; + Y = integrator.u; + p = integrator.p; + params = p.params; + cm_params = CAP.microphysics_params(params); + thermo_params = CAP.thermodynamics_params(params); + + FT = eltype(Y) + ᶜYₜ = Y .* FT(0) + c_xyz = CC.Fields.coordinate_field(Y.c) + f_xyz = CC.Fields.coordinate_field(Y.f) + x = c_xyz.x + y = c_xyz.y + z = c_xyz.z + + u = @. sin(x) * cos(y) + v = @. sin(y) * cos(x) + w = @. z + + u_x = @. cos(x) * cos(y) + v_x = @. -sin(y) * sin(x) + u_y = @. -sin(x) * sin(y) + v_y = @. cos(y) * cos(x) + w_x = zeros(axes(Y.c)) + w_y = zeros(axes(Y.c)) + + vel = @. CC.Geometry.UVVector(u, v) + vel = @. CC.Geometry.UVWVector(u,v,w) + + wgrad = CC.Operators.WeakGradient() + grad = CC.Operators.Gradient() + div = CC.Operators.Divergence() + wdiv = CC.Operators.WeakDivergence() + + ∇vel = @. grad(vel) + ∇velᵀ = similar(∇vel) + @. ∇velᵀ = CC.Geometry.AxisTensor(CC.Geometry.axes(∇vel), transpose(CC.Geometry.components(∇vel))) + S = @. FT(1/2) * (∇vel + ∇velᵀ) + S₃ = @. CC.Geometry.project(CC.Geometry.UVWAxis(), S) + # Then, if ᶜϵ is known, we can compute + # the S₃ complete strain-rate tensor, and then take its + # divergence such that we can add it to the tendency terms. + divS = @. wdiv(S₃) + + + ### Component test begins here +end diff --git a/toml/bomex_box_rhoe.toml b/toml/bomex_box_rhoe.toml index 338971556f..d6cc60852a 100644 --- a/toml/bomex_box_rhoe.toml +++ b/toml/bomex_box_rhoe.toml @@ -1,3 +1,5 @@ [C_E] value = 0.044 +[zd_rayleigh] +value = 3250.0 diff --git a/toml/dycoms_box_rhoe.toml b/toml/dycoms_box_rhoe.toml new file mode 100644 index 0000000000..ed4055fa2a --- /dev/null +++ b/toml/dycoms_box_rhoe.toml @@ -0,0 +1,3 @@ +[zd_rayleigh] +value = 1250.0 +