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dissertation.tex
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% HEADER
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\documentclass[11pt]{unc_dissertation}
%Font packages
\usepackage[T1]{fontenc}
\usepackage[latin1]{inputenc}
\usepackage{import}
%Bilbiography styles
\bibliographystyle{ieeetr}
% List of acronyms
\usepackage{longtable}
\usepackage[acronym]{glossaries}
%% Math Packages %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\usepackage{amsmath}
\usepackage{amsthm}
\usepackage{amsfonts}
\usepackage{bbm}
\usepackage{amssymb}
\usepackage{geometry}
%% Reduce spacing between paragraph and section title %%%%%%%
%% @todo: Put this modification in the class file itself.
\usepackage{titlesec}
\titlespacing*{\section}
{0pt}{-5pt}{0pt}
\titlespacing*{\subsection}
{0pt}{-5pt}{0pt}
\usepackage{indentfirst} %Indents first paragraphs in every section.
%% Flush footnotes to the left
\usepackage[hang,flushmargin]{footmisc}
%% Places footnotes immediately below horizontal rule
\setlength{\footnotesep}{0pt}
%% Normal LaTeX or pdfLaTeX? %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\RequirePackage{ifpdf}
%% Packages for Graphics & Figures %%%%%%%%%%%%%%%%%%%%%%%%%%
\ifpdf %%Inclusion of graphics via \includegraphics{file}
\usepackage[pdftex]{graphicx} %%graphics in pdfLaTeX
\else
\usepackage[dvips]{graphicx} %%graphics and normal LaTeX
\fi
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% DOCUMENT SETTINGS
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\title{Dissertation Title}
\author{Dissertation Author}
\committee{Advisor}{Committee Member}{Committee Member}{Committee Member}{Committee Member}
\date{January 1, 1970}
\input{abstract.tex}
\dedication{To Wawa}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% GLOSSARIES AND ABBREVIATIONS
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% To update the printed glossary, you need to run:
% - pdflatex dissertation
% - makeglossaries dissertation
% - pdflatex dissertation
% On Windows, you might need to install Perl first.
\newacronym{unc}{UNC}{The University of North Carolina at Chapel Hill}
\makeglossaries
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% DOCUMENT
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\linespread{1.0}
\begin{document}
%% File Extensions of Graphics %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\ifpdf
\DeclareGraphicsExtensions{.pdf,.jpg,.png}
\else
\DeclareGraphicsExtensions{.eps}
\fi
\pagestyle{plain}
%%%%%%%%%%%%%%%%%
%% INITIAL THINGS
%%%%%%%%%%%%%%%%%
\frontmatter
\maketitle
\chapter*{Acknowledgements}
\input{acknowledgements.tex}
% The graduate school requires that entries are double spaced.
% They also require that multiple lines in a single entry are single spaced.
% This achieves that by setting \baselineskip (the space between lines)
% and \parskip (the additional space between paragraphs) directly, then restoring them
%
% @todo: Find a more elegant way of achieving this
% Establish original spacings
\newlength{\oldbaselineskip}
\setlength{\oldbaselineskip}{\the\baselineskip}
\newlength{\oldparskip}
\setlength{\oldparskip}{\the\parskip}
% Set spacings for these sections
\setlength{\baselineskip}{0.5\oldbaselineskip}
\setlength{\parskip}{0.5\oldbaselineskip}
\tableofcontents
\listoffigures
\listoftables
% Restore original spacings
\setlength{\baselineskip}{1.0\oldbaselineskip}
\setlength{\parskip}{1.0\oldparskip}
\listofabbreviations
\mainmatter
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%MAIN CHAPTERS%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\pagestyle{plain} % Restore page numbers
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter 0
% Everything, disorganized
\chapter{Chapter 0}
\input{UseCasePINNs.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter 1
% Overview of Neural Networks and Supervised (Learning) NN Approximation
\chapter{Chapter 1}
\input{chapter1.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter 2
% Brief Introduction to equation-informed (unsupervised) NN approximations to PDEs PINNs, overview of results (forward, backward, identification, SDEs), FFR Application? ROM and surrogate models,
\chapter{Chapter 2}
\input{chapter2.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter 3
% Brief Introduction to equation-informed (unsupervised) NN approximations to PDEs PINNs, overview of results (forward, backward, identification, SDEs), FFR Application?
\chapter{Chapter 3}
\input{chapter2.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% 1D Deep LS, Deep FOSLS, Deep Energy Method comparison
\chapter{Chapter 2}
\input{chapter2.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% 2D (Unconstrained?) PDEs
% Deep FOSLS vs PINNs comparison.
% Poisson-like Equations
% Poisson
% Diffusion
% Helmholtz
%
\chapter{Chapter 2}
%laplace
\input{poisson2d.tex}
\input{surfacepoisson2d.tex}
%\input{diffusion2d.tex}
%\input{diffusionreaction2d.tex}
%singularlyperturbed
\input{advectiondiffusionreaction2d.tex}
\input{helmholtz2d.tex}
\input{chapter2.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% Introduction: FEM and LSFEM methods
% Linear and Hyperelastic Elasticity
% PINNs vs Deep FOSLS (Deep Energy Method?)comparison
% thesisLeast-squares mixed finite elements for geometricallySteegerDiss.pdf
\chapter{Finite Element Methods and Least-Squares FEM in Solid and Fluid Mechanics}
%\input{Galerkin and mixed Galerkin finite elements.tex}
\input{GalerkinandMixedGalerkinFiniteElements.tex}
%\input{Least-squares mixed finite elements.tex}
\input{LeastSquaresMixedFiniteElements.tex}
%\input{Outline}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% 2D Static Solid Mechanics
% Linear and Hyperelastic Elasticity
% PINNs vs Deep FOSLS (Deep Energy Method?)comparison
% thesisLeast-squares mixed finite elements for geometricallySteegerDiss.pdf
\chapter{Continuum mechanical background}
\input{KinematicsAndDeformationMeasures.tex}
\input{StressQuantities.tex}
\input{Hyperelasticmaterials.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% Background: LSFFEM for Steady Newtonian Fluid Mechanics
\chapter{First-Order Systems Least-Squares Formulations of Navier-Stokes Equations for Steady Newtonian Fluid Mechanics}
\input{LinearElasticityPureTractionFormulation.tex}
\input{LinearElasticityPureDisplacementFormulation.tex}
\input{LinearElasticityTractionDisplacementFormulation.tex}
\input{hyperelasticfosls.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% Background: LSFFEM for Steady Newtonian Fluid Mechanics
\chapter{First-Order Systems Least-Squares Formulations of Navier-Stokes Equations for Steady Newtonian Fluid Mechanics}
\input{VPFormulation.tex}
\input{VVFormulation.tex}
\input{VVPFormulation.tex}
\input{VPSFormulation.tex}
\input{VVGFormulation.tex}
\input{VVTFormulation.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% PINN Approximations to Navier-Stokes:
% 2D Steady Newtonian Fluid Mechanics
\chapter{PINN Approximations to Navier-Stokes: Steady Newtonian Fluid Mechanics}
\input{chapter2.tex}
\subimport{notes/}{windkessel_overview.tex}
%\input{./notes/windkessel_overview.tex}
%\input{../notes/FOSLS/BLOCKSTENOSISSTEADY2D.tex}
%\input{/notes/FOSLS/BLOCKSTENOSISSTEADY2D.tex}
%\input{../notes/FOSLS/BLOCKSTENOSIS_STEADY_2D.tex}
%\input{../notes/FOSLS/SECTION_ANNULARRING_STEADY_2D.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% 2D Steady Non-Newtonian Fluid Mechanics, Special Methods, Applications
\chapter{Chapter 2}
\input{chapter2.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% Time-Dependent FOSLS Method, 1D/2D Advection-Diffusion-Reaction, Burger's, KdV, NL Schrodinger
\chapter{Chapter 2}
\input{chapter2.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% PIGAN FOSLS vs Primitive FOSLS: Pressure Reconstruction, Darcy, and Elasticity
\chapter{Chapter 2}
\input{chapter2.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% Bayesian PINNs vs Bayesian FOSLS PINNs for UQ, noise distributions
\chapter{Chapter 2}
\input{chapter2.tex}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
%
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Chapter
% Operator Learning (DeepONet, MIONet, and Fourcastnet) 1D Deep LS, Deep FOSLS, Deep Energy Method comparison
\chapter{Chapter 2}
\input{chapter2.tex}
{\tiny }
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% BIBLIOGRAPHY AND OTHER LISTS
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\backmatter
% Bibliography
\bibliography{dissertation}
\addtocontents{toc}{\protect\vspace*{\baselineskip}}
% Add bibliography to contents page
%\addcontentsline{toc}{chapter}{Bibliography} %'Bibliography' into toc
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% APPENDICES
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\appendix
\chapter{}
\section{}
\end{document}