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--- /dev/null
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diff --git a/output/analyze/analyze_sum_matrix/1M/threshold-0.1/output_sum_matrix_1M_1CDX2_v1.txt b/output/analyze/analyze_sum_matrix/1M/threshold-0.1/output_sum_matrix_1M_1CDX2_v1.txt
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--- /dev/null
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--- /dev/null
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--- /dev/null
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new file mode 100644
index 0000000..1a2f5b5
--- /dev/null
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new file mode 100644
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--- /dev/null
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new file mode 100644
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+273 2397 38
+401 3082 40
+402 3082 28
+406 2495 27
+508 2717 38
+534 1666 45
+542 1290 28
+651 1269 29
+657 3999 34
+797 1388 27
+830 3828 29
+957 4122 38
+1035 1140 27
+1085 1703 27
+1085 2309 50
+1086 3082 27
+1367 4306 28
+1388 4008 27
+1389 4721 53
+1457 3082 65
+1541 3048 57
+1652 3873 30
+1652 4507 34
+1685 4538 91
+1703 4538 127
+1771 3375 30
+1810 3660 27
+1831 4831 42
+1837 4887 58
+1914 4369 30
+1991 2990 36
+2003 3082 61
+2009 3082 29
+2239 2922 33
+2268 4922 33
+2309 3082 62
+2310 3082 40
+2310 4538 110
+2321 3082 36
+2478 2677 35
+2520 2930 31
+2520 2931 100
+2566 4649 42
+2573 3082 28
+2803 4361 40
+2829 3082 30
+2948 3574 52
+3082 3570 42
+3082 3679 35
+3082 3842 45
+3082 3843 41
+3082 4080 30
+3082 4254 234
+3082 4465 42
+3082 4656 41
+3141 4881 30
+3141 4882 40
+3231 4106 36
+3293 4538 118
+3319 4953 28
+3319 4954 46
+3541 3774 27
+3679 4254 241
diff --git a/output/analyze/analyze_sum_matrix/500k/threshold-0.1/output_sum_matrix_500k_1CDX4_v1.txt b/output/analyze/analyze_sum_matrix/500k/threshold-0.1/output_sum_matrix_500k_1CDX4_v1.txt
new file mode 100644
index 0000000..a3812e7
--- /dev/null
+++ b/output/analyze/analyze_sum_matrix/500k/threshold-0.1/output_sum_matrix_500k_1CDX4_v1.txt
@@ -0,0 +1,110 @@
+bin1 bin2 count
+6 3082 42
+7 3082 38
+8 3082 39
+9 3082 44
+11 3082 35
+12 3082 35
+14 3082 33
+19 3082 36
+20 3082 36
+26 3082 35
+111 4916 37
+132 2703 40
+180 3082 79
+222 1928 56
+273 2397 57
+401 3082 52
+402 3082 35
+403 3082 39
+405 3082 42
+406 3082 46
+408 3082 34
+487 4017 34
+508 2717 51
+534 1666 49
+593 5141 34
+594 2962 33
+674 4011 36
+702 3907 51
+704 2560 40
+720 1203 33
+935 2474 36
+957 4122 38
+1035 1140 39
+1085 1703 54
+1085 2309 60
+1085 4061 33
+1086 3082 41
+1096 3082 39
+1101 3082 33
+1353 1476 33
+1389 4721 55
+1457 3082 113
+1541 3048 63
+1572 2731 45
+1652 3873 33
+1652 4507 42
+1685 4538 88
+1703 3082 41
+1703 4538 156
+1704 3082 42
+1771 3375 56
+1829 3168 46
+1831 4831 40
+1837 4887 48
+1849 4358 44
+1991 2990 39
+2003 3082 87
+2004 3082 42
+2005 3082 53
+2006 3082 44
+2009 3082 33
+2010 3082 44
+2189 4647 39
+2309 3082 107
+2310 3082 85
+2310 4538 127
+2311 3082 64
+2312 3082 42
+2313 3082 41
+2314 3082 33
+2316 3082 33
+2317 3082 34
+2320 3082 57
+2321 3082 44
+2322 3082 37
+2323 3082 39
+2511 3424 36
+2520 2930 52
+2520 2931 149
+2565 4649 34
+2573 3082 46
+2574 3082 40
+2587 3082 33
+2732 3641 38
+2803 4361 53
+2828 3082 38
+2829 3082 35
+2948 3574 54
+3082 3570 55
+3082 3571 38
+3082 3574 36
+3082 3679 56
+3082 3842 59
+3082 3843 46
+3082 3844 39
+3082 4254 303
+3082 4465 50
+3082 4656 85
+3141 4881 35
+3231 4106 62
+3293 4538 144
+3305 4902 39
+3319 4953 36
+3319 4954 43
+3541 3774 42
+3679 4254 307
+4268 4656 41
+4268 4838 39
+4527 4900 39
diff --git a/output/cytoscape-fig/SumMatrix_500k_1M.cys b/output/cytoscape-fig/SumMatrix_500k_1M.cys
new file mode 100644
index 0000000..d0acff7
Binary files /dev/null and b/output/cytoscape-fig/SumMatrix_500k_1M.cys differ
diff --git a/src/analyze/AnalyzeSumMatrix.py b/src/analyze/AnalyzeSumMatrix.py
index 580ee1c..c7f0cc8 100644
--- a/src/analyze/AnalyzeSumMatrix.py
+++ b/src/analyze/AnalyzeSumMatrix.py
@@ -61,8 +61,11 @@ def main():
 
     matrix_file = "analyze-{}/SumMatrix/sum_matrix_{}_{}.txt".format(bin_size, bin_size, cell_type)
     chrom_bin_range = "metadata/chrom_bins_range_{}.txt".format(bin_size)
-    output_file = "output/analyze/analyze_sum_matrix/{}/output_sum_matrix_{}_{}.txt".format(bin_size, bin_size,
-                                                                                            cell_type)
+    # output_file = "output/analyze/analyze_sum_matrix/{}/output_sum_matrix_{}_{}_v1.txt".format(bin_size, bin_size,
+    #                                                                                                       cell_type)
+    output_file = "output/analyze/analyze_sum_matrix/{}/threshold-0.1/output_sum_matrix_{}_{}_v1.txt".format(bin_size,
+                                                                                                             bin_size,
+                                                                                                             cell_type)
 
     bin_range = {}
     with open(chrom_bin_range) as f:
@@ -121,22 +124,31 @@ def main():
     # unique, counts = np.unique(data, return_counts=True)
     M = ((count_N - count_X) ** 2 - sum_reduction) / 2
 
+    # print(M)
+    # sys.exit(0)
+
     count1 = 0
     p_max = calculate_pmax(M, sum_max)
     # my_list = []
     data = np.triu(data, k=-1)
     out = open(output_file, "w")
-    out.write("{} {} {} {}\n".format("bin1", "bin2", "count", "p_value"))
+    out.write("{} {} {}\n".format("bin1", "bin2", "count", "p_value"))
+    # out.write("{} {} {} {}\n".format("bin1", "bin2", "count", "p_value"))
 
     for i in range(0, rows):
         for j in range(0, cols):
             if data[i][j] != 0:
                 value = int(data[i][j])
                 p_value = calculate_f(number_of_cells, value, p_max)
-                if p_value <= threshold(M):
+                # if p_value <= threshold(M):
+                #     count1 += 1
+                #     out.write("{} {} {} {}\n".format(i, j, value, p_value))
+                # my_list.append(value)
+
+                if value >= number_of_cells / 10:
                     count1 += 1
-                    out.write("{} {} {} {}\n".format(i, j, value, p_value))
-                    # my_list.append(value)
+                    out.write("{} {} {}\n".format(i, j, value, p_value))
+
     out.close()
 
     # my_arr = np.array(my_list)