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Determine y fraction cutoff #65

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KhanhLPBao opened this issue Dec 24, 2020 · 1 comment

KhanhLPBao commented Dec 24, 2020

Hi, I'm just new to bioinformatics and trying WisecondorX for treatment with my fastq data. On the making reference there is --yfrac command that I have to type. My sample contain both male and female and I have search but cannot find anyway to determine Y read fraction cutoff. How can you calculate the fraction cutoff for making reference?

leraman mentioned this issue

Added --plotyfrac option and automatic CPA calculation #67

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leraman commented Jan 5, 2021

An option (--plotyfrac) for plotting the yfrac has been added to the newest release

release:
https://github.com/CenterForMedicalGeneticsGhent/WisecondorX/releases/tag/v1.2.0

--plotyfrac:
https://github.com/CenterForMedicalGeneticsGhent/WisecondorX#stage-2-create-reference

leraman closed this as completed

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