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Fix version number 1.2.9 #126

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Stikus opened this issue Oct 3, 2024 · 0 comments
Open

Fix version number 1.2.9 #126

Stikus opened this issue Oct 3, 2024 · 0 comments

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@Stikus
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Stikus commented Oct 3, 2024

Hello, shouldn't version in https://github.com/CenterForMedicalGeneticsGhent/WisecondorX/blob/master/setup.cfg be 1.2.9?

[metadata]
name = wisecondorx
version = 1.2.7
description = description="WisecondorX -- an evolved WISECONDOR"
long_description = file: README.md
author = "Matthias De Smet, Lennart Raman",

Currently, it looks like that version 1.2.7 is installed from master branch:

root@ef58119b9b72:/outputs#
export WISECONDOR_VERSION="1.2.9"
pip install --no-cache-dir -U git+https://github.com/CenterForMedicalGeneticsGhent/WisecondorX@"v$WISECONDOR_VERSION" 
Collecting git+https://github.com/CenterForMedicalGeneticsGhent/[email protected]                                                                
  Cloning https://github.com/CenterForMedicalGeneticsGhent/WisecondorX (to revision v1.2.9) to /tmp/pip-req-build-sa5dfys6                        
  Running command git clone --filter=blob:none --quiet https://github.com/CenterForMedicalGeneticsGhent/WisecondorX /tmp/pip-req-build-sa5dfys6   
  Resolved https://github.com/CenterForMedicalGeneticsGhent/WisecondorX to commit 8d4ce38254519dadbe059c235d4cd31698ccdf0c                        
  Installing build dependencies ... done                                                                                                          
  Getting requirements to build wheel ... done                                                                                                    
  Preparing metadata (pyproject.toml) ... done                                                                                                    
Collecting scipy (from wisecondorx==1.2.7)                                                                                                        
  Downloading scipy-1.14.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)                                            
Collecting scikit-learn (from wisecondorx==1.2.7)                                                                                                 
  Downloading scikit_learn-1.5.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (13 kB)                                      
Collecting pysam (from wisecondorx==1.2.7)                                                                                                        
  Downloading pysam-0.22.1-cp310-cp310-manylinux_2_28_x86_64.whl.metadata (1.5 kB)                                                                
Collecting numpy (from wisecondorx==1.2.7)                                                                                                        
  Downloading numpy-2.1.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB)                                             
Collecting pandas (from wisecondorx==1.2.7)                                                                                                       
  Downloading pandas-2.2.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB)                                            
Collecting python-dateutil>=2.8.2 (from pandas->wisecondorx==1.2.7)                                                                               
  Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)                                                                  
Collecting pytz>=2020.1 (from pandas->wisecondorx==1.2.7)                                                                                         
  Downloading pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB)                                                                                   
Collecting tzdata>=2022.7 (from pandas->wisecondorx==1.2.7)                                                                                       
  Downloading tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB)                                                                                
Collecting joblib>=1.2.0 (from scikit-learn->wisecondorx==1.2.7)                                                                                  
  Downloading joblib-1.4.2-py3-none-any.whl.metadata (5.4 kB)                                                                                     
Collecting threadpoolctl>=3.1.0 (from scikit-learn->wisecondorx==1.2.7)                                                                           
  Downloading threadpoolctl-3.5.0-py3-none-any.whl.metadata (13 kB)                                                                               
Requirement already satisfied: six>=1.5 in /usr/lib/python3/dist-packages (from python-dateutil>=2.8.2->pandas->wisecondorx==1.2.7) (1.16.0)                  
Downloading numpy-2.1.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.3 MB)                                                                  
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.3/16.3 MB 47.4 MB/s eta 0:00:00                                                                                
Downloading pandas-2.2.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB)                                                                 
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.1/13.1 MB 59.1 MB/s eta 0:00:00                                                                                
Downloading pysam-0.22.1-cp310-cp310-manylinux_2_28_x86_64.whl (22.0 MB)                                                                                      
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 22.0/22.0 MB 59.6 MB/s eta 0:00:00                                                                                
Downloading scikit_learn-1.5.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.3 MB)                                                           
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.3/13.3 MB 57.1 MB/s eta 0:00:00                                                                                
Downloading scipy-1.14.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (41.2 MB)                                                                 
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 41.2/41.2 MB 52.4 MB/s eta 0:00:00                                                                                
Downloading joblib-1.4.2-py3-none-any.whl (301 kB)                                                                                                            
Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)                                                                                         
Downloading pytz-2024.2-py2.py3-none-any.whl (508 kB)                                                                                                         
Downloading threadpoolctl-3.5.0-py3-none-any.whl (18 kB)                                                                                                      
Downloading tzdata-2024.2-py2.py3-none-any.whl (346 kB)                                                                                                       
Building wheels for collected packages: wisecondorx                                                                                                           
  Building wheel for wisecondorx (pyproject.toml) ... done                                                                                                    
  Created wheel for wisecondorx: filename=wisecondorx-1.2.7-py3-none-any.whl size=29060 sha256=8afb901af2be6c57174ebf0d4c558251ed19e22e77f7c864d12540b8205c55a
2                                                                                                                                                             
  Stored in directory: /tmp/pip-ephem-wheel-cache-dt0t_8zg/wheels/48/9a/f7/b63540d99a260f750fb3b387864b163af8c93c93e951c82bdb                                 
Successfully built wisecondorx                                                                                                                                
Installing collected packages: pytz, tzdata, threadpoolctl, python-dateutil, pysam, numpy, joblib, scipy, pandas, scikit-learn, wisecondorx                   
Successfully installed joblib-1.4.2 numpy-2.1.1 pandas-2.2.3 pysam-0.22.1 python-dateutil-2.9.0.post0 pytz-2024.2 scikit-learn-1.5.2 scipy-1.14.1 threadpoolct
l-3.5.0 tzdata-2024.2 wisecondorx-1.2.7                                                                                                                       
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