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cvmix.tex
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\documentclass[10pt]{book}
\usepackage{bm,amsmath}
\usepackage{makeidx}
\usepackage{color}
\usepackage{natbib}
\usepackage{mfpic}
\usepackage{pxfonts}
\usepackage{lastpage}
\usepackage{graphicx}
\usepackage{verbatim}
\usepackage{authblk}
\usepackage{tikz}
\usepackage[framemethod=tikz]{mdframed}
\usepackage{titlesec}
\titleformat*{\section}{\LARGE\bfseries}
\titleformat*{\subsection}{\Large\bfseries}
\titleformat*{\subsubsection}{\large\bfseries}
\titleformat*{\paragraph}{\large\bfseries}
\titleformat*{\subparagraph}{\large\bfseries}
\renewcommand{\familydefault}{\sfdefault}
\usepackage{minitoc}
\renewcommand{\mtcfont}{\small\sffamily}
\renewcommand{\mtcSfont}{\small\sffamily}
\usepackage[Lenny]{./styles/fncychap}
%\evensidemargin -.2in
%\oddsidemargin .2in
\evensidemargin -.3in
\oddsidemargin 0.0in
\topmargin -0.50in
\textheight 9.0in
\renewcommand{\baselinestretch}{1.0}
\textwidth 6.5in
\usepackage{fancyhdr}
\pagestyle{fancy}
\fancyhf{}
\lhead{\leftmark}
\rhead{Section \thesection}
\lfoot{{\sc CVMix theory and numerics}}
\cfoot{\today}
\rfoot{Page \thepage}
\renewcommand{\footrulewidth}{1pt}
\usepackage{kpfonts}
\fancyhead[LE,LO]{\textsc{\textbf{\nouppercase{\leftmark}}}}
\usepackage{titlesec,titletoc}
\titleclass{\part}{top}
\titleformat{\part}
{\centering\normalfont\Huge\bfseries}{}{0pt}{}
\usepackage{./styles/Griffies_style}
\usepackage{hyperref} % must be used last in the list of packages
\hypersetup{colorlinks=true,linkcolor=blue,citecolor=blue,filecolor=blue,urlcolor=blue}
\setcounter{tocdepth}{1}
\setcounter{minitocdepth}{3}
\setcounter{secnumdepth}{3}
\makeindex
\citeindextrue
\title{\sc Theory and Numerics of the Community
\\ Ocean Vertical Mixing (CVMix) Project}
\date{\today}
\author[$\star$]{Stephen M. Grif\/f\/ies \thanks{[email protected]}}
\affil[$\star$]{NOAA/Geophysical Fluid Dynamics Laboratory, Princeton USA}
\author[$\dagger$]{Michael Levy \thanks{[email protected]}}
\affil[$\dagger$]{National Center for Atmospheric Research, Boulder USA}
\author[$\star$]{Alistair J. Adcroft \thanks{[email protected]}}
\author[$\dagger$]{Gokhan Danabasoglu \thanks{[email protected]}}
\author[$\star$]{Robert W. Hallberg \thanks{[email protected]}}
\author[$\triangle$]{Doug Jacobsen \thanks{[email protected]}}
\affil[$\triangle$]{Los Alamos National Laboratory, Los Alamos USA}
\author[$\dagger$]{William Large \thanks{[email protected]}}
\author[$\triangle$]{Todd Ringler \thanks{[email protected]}}
\begin{document}
\pagenumbering{roman}
\maketitle
\thispagestyle{empty}
%\newpage
\begin{center}
{\scshape \Large The CVMix Project}
\end{center}
{\sc Community Ocean Vertical Mixing (CVMix)} is a software package
that aims to provide transparent, robust, flexible, well documented,
shared Fortran source code for use in parameterizing vertical mixing
processes in numerical ocean models. The project is focused on
developing software for a consensus of closures that return a vertical
diffusivity, viscosity, and possibly a non-local transport, with each
quantity dependent on the tracer or velocity being mixed. CVMix
modules are written as kernals designed for use in a variety of
Fortran ocean model codes such as MPAS-ocean, MOM, and POP. CVMix
modules use MKS units and expect the same for input and output. Code
development occurs within a community of scientists and engineers who
make use of CVMix modules for a variety of ocean codes. CVMix modules
are freely distributed to the open source community under GPLv2 using
an open source methodology.
\vspace{2cm}
\noindent
This document is freely distributed and should be referenced as the
following. \vspace{.25cm}
\noindent
{\bf
{\scshape{Theory and Numerics of the Community Ocean Vertical
Mixing (CVMix) Project}}
\\
S.M. Grif\/f\/ies, M. Levy, A.J. Adcroft, G. Danabasoglu,
R.W. Hallberg, D. Jacobsen, W. Large, T. Ringler
\\
Technical Report
\\
Draft from \today
\\
\pageref{LastPage} + v pages\\
}
\vspace{.4cm}
\noindent
This document was prepared using \LaTeX \hspace{.1cm} as described by
\cite{Latex} and \cite{LatexCompanion}.
\newpage
\dominitoc
\tableofcontents
\listoffigures
\newpage
\pagenumbering{arabic}
\input{cvmix_intro}
\input{cvmix_elements}
\input{cvmix_MODULE}
\input{cvmix_background}
\input{cvmix_shear}
\input{cvmix_tidal}
\input{cvmix_ddiff}
\input{cvmix_kpp}
%\input{cvmix_convection}
%\input{cvmix_dissipation}
%%%%%%%%%%%%%%%%%%%%% References %%%%%%%%%%%%%%%%%%%%%%%%%%%
\newpage
\bibliographystyle{./references/elsarticle-harv.bst}
\addcontentsline{toc}{chapter}{\scshape Bibliography}
\markboth{\scshape BIBLIOGRAPHY}{\scshape BIBLIOGRAPHY}
\gdef\rightmark{\scshape BIBLIOGRAPHY}
%\bibliography{./references/Griffies_refs}
\bibliography{/Users/smg/Documents/TEX/bibtex/Griffies_refs}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
\printindex
\end{document}