runSourceAnalysis.sh

#!/bin/sh

PARSED_OPTIONS=$(getopt -n "$0"  -o i:p:lvwb --long "input:led:long,view,web,baseline,fromHistos"  -- "$@")
#Bad arguments, something has gone wrong with the getopt command.
if [ $? -ne 0 ];
then
    echo "Usage: $0 -i input"
  exit 1
fi

eval set -- "$PARSED_OPTIONS"

inputFile=""
ledFile=""
long=0
fromHistos=0
view=0
web=0
baseline=0


while true;
do
  case "$1" in
    -i|--input)
      if [ -n "$2" ];
      then
	  inputFile=$2
	  echo "Running fit on ${inputFile}"
      fi
      shift 2;;

    -p|--led)
      if [ -n "$2" ];
      then
          ledFile=$2
          echo "Ledrun ${ledFile}"
      fi
      shift 2;;

    -l|--long)
      long=1
      echo "LongRun analysis"
      shift;;
    -v|--view)
      view=1
      echo "View analysis results"
      shift;;
    -w|--web)
      web=1
      echo "Transfer to web server"
      shift;; 
    -b|--baseline)
      baseline=1
      echo "Analysis baseline"
      shift;;
    --fromHistos)
      fromHistos=1
      echo "Running from histograms"
      shift;; 
    --)
      shift
      break;;
  esac
done

if [ "$inputFile" == "" ];
then
    echo "Usage: $0 -i inputFile. Please check your inputs"
  exit 1
fi

if [ "$ledFile" == "" ];
then
    echo "Usage: $0 -p ledFile. Please check your inputs"
  exit 1
fi


source ~/H4AnalysisEnv.sh

mkdir -p SourceAnalysis



if [ $long -eq 1 ]; then
    if [ $fromHistos -eq 0 ]; then
	python fitSource.py --input=/data/cmsdaq/source/ntuples/h4Reco_$inputFile.root --output=SourceAnalysis --led=SinglePEAnalysis/${ledFile}_simul_out.root --longRun
    else
	if [ ! -f "/data/cmsdaq/source/histos/histos_${inputFile}.root" ]; then
	    python makeHisto.py --input=/data/cmsdaq/source/ntuples/h4Reco_${inputFile}.root --output=/data/cmsdaq/source/histos/histos_${inputFile}.root --inputEnvData=/data/cmsdaq/slowControl/temperatures  --runType=source --longRun
	fi
	python fitSource.py --input=/data/cmsdaq/source/histos/histos_$inputFile.root --output=SourceAnalysis --led=SinglePEAnalysis/${ledFile}_simul_out.root --fromHistos --longRun
    fi
else
    if [ $fromHistos -eq 0 ]; then
	python fitSource.py --input=/data/cmsdaq/source/ntuples/h4Reco_$inputFile.root --output=SourceAnalysis --led=SinglePEAnalysis/${ledFile}_simul_out.root
    else
	if [ ! -f "/data/cmsdaq/source/histos/histos_${inputFile}.root" ]; then
	    python makeHisto.py --input=/data/cmsdaq/source/ntuples/h4Reco_${inputFile}.root --output=/data/cmsdaq/source/histos/histos_${inputFile}.root --inputEnvData=/data/cmsdaq/slowControl/temperatures  --runType=source
	fi
	python fitSource.py --input=/data/cmsdaq/source/histos/histos_$inputFile.root --output=SourceAnalysis --led=SinglePEAnalysis/${ledFile}_simul_out.root --fromHistos
    fi
fi

python fitWaveform.py --input=/data/cmsdaq/source/ntuples/h4Reco_${inputFile}.root --output=SourceAnalysis


if [ $baseline -eq 1 ]; then
	python AnalisysBaseline.py --input=/data/cmsdaq/source/ntuples/h4Reco_${inputFile}.root --output=SourceAnalysis
fi

if [ $view -eq 1 ]; then
    for file in SourceAnalysis/chargeFit*${inputFile}*.png SourceAnalysis/fitWaveform*${inputFile}*.png SourceAnalysis/baselineRMS*${inputFile}*.png; do
	display $file > /dev/null 2>&1 & 
    done
fi

if [ $web -eq 1 ]; then
    mkdir -p /data/cmsdaq/www/process/${inputFile}
    cp -v /data/cmsdaq/www/process/index.php /data/cmsdaq/www/process/${inputFile}/index.php
    for file in SourceAnalysis/chargeFit*${inputFile}*.png SourceAnalysis/fitWaveform*${inputFile}*.png SourceAnalysis/baselineRMS*${inputFile}*.png; do
	cp -v $file /data/cmsdaq/www/process/${inputFile}/
    done
    for file in SourceAnalysis/chargeFit*${inputFile}*.pdf SourceAnalysis/fitWaveform*${inputFile}*.pdf SourceAnalysis/baselineRMS*${inputFile}*.png; do
	cp -v $file /data/cmsdaq/www/process/${inputFile}/
    done
    . /home/cmsdaq/mattermost.ini
    python summary.py --input=${inputFile} --output=SourceAnalysis
  # curl -i -X POST -H 'Content-Type: application/json' -d '{"text": "#### SOURCE Run analysed '${inputFile}' :tada:\n Results available at http://10.0.0.44/process/'${inputFile}'\n", "username": "pmt-bench"}' ${WEB_HOOK}
fi