setup.py

"""Install GeneFlow Workflow Engine."""
import os

from setuptools import setup, find_packages
from setuptools.command.develop import develop
from setuptools.command.install import install

BASE_DIR = os.path.abspath(os.path.dirname(__file__))
README = open(os.path.join(BASE_DIR, 'README.md'), encoding='utf-8').read()
VERSION = open(os.path.join(BASE_DIR, 'VERSION'), encoding='utf-8').read()

INSTALL_REQUIRES = [
    pkg for pkg in open('requirements.txt').readlines()
]

PYTHON_REQUIRES = '>=3.5.*'

class PostDevelopCommand(develop):
    """Post-installation for development mode."""
    def run(self):
        develop.run(self)

class PostInstallCommand(install):
    """Post-installation for installation mode."""
    def run(self):
        install.run(self)

setup(
    name='geneflow',
    version=VERSION,
    description="A light-weight platform-agnostic workflow engine for scientific computing.",
    long_description=README,
    classifiers=[
        # Get strings from http://pypi.python.org/pypi?%3Aaction=list_classifiers
        'Development Status :: 5 - Production/Stable',
        'Intended Audience :: Science/Research',
        'Intended Audience :: Developers',
        'Operating System :: POSIX :: BSD',
        'Programming Language :: Python :: 3',
        'Programming Language :: Python :: 3.5',
        'Programming Language :: Python :: 3.6',
        'Programming Language :: Python :: 3.7',
        'Programming Language :: Python :: 3.8',
        'Programming Language :: Python :: 3 :: Only',
        'Topic :: Scientific/Engineering :: Bio-Informatics'
    ],
    keywords='workflow agave bioinformatics',
    author='GeneFlow Development Team',
    author_email='oamdsupport@cdc.gov',
    url='https://github.com/CDCgov/geneflow2',
    license='Apache 2.0',
    packages=find_packages('src', exclude=["*.test"]),
    package_dir={'': 'src'},
    package_data={'': ['data/sql/geneflow.sql',
                       'data/sql/geneflow-sqlite.sql',
                       'data/templates/agave-app-def.json.j2.j2',
                       'data/templates/wrapper-script.sh.j2',
                       'data/templates/test.sh.j2']},
    include_package_data=True,
    zip_safe=False,
    install_requires=INSTALL_REQUIRES,
    extras_require={
        'tapis': ['agavepy==1.0.0a11'],
        'hpc': ['drmaa']
    },
    python_requires=PYTHON_REQUIRES,
    cmdclass={
        'develop': PostDevelopCommand,
        'install': PostInstallCommand
        },
    entry_points={
        'console_scripts': [
            'geneflow = geneflow.__main__:main',
            'gf = geneflow.__main__:main'
        ]
    }
)