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Remove UTF-8 Encoding Headers (#422)
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remove UTF-8 encoding headers
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AFg6K7h4fhy2 authored Aug 29, 2024
1 parent 1f7da68 commit 33ac845
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Showing 43 changed files with 0 additions and 61 deletions.
2 changes: 0 additions & 2 deletions pyrenew/convolve.py
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# -*- coding: utf-8 -*-

"""
convolve
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2 changes: 0 additions & 2 deletions pyrenew/deterministic/__init__.py
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# -*- coding: utf-8 -*-

# numpydoc ignore=GL08

from pyrenew.deterministic.deterministic import DeterministicVariable
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1 change: 0 additions & 1 deletion pyrenew/deterministic/deterministic.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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1 change: 0 additions & 1 deletion pyrenew/deterministic/deterministicpmf.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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2 changes: 0 additions & 2 deletions pyrenew/distutil.py
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# -*- coding: utf-8 -*-

"""
distutil
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2 changes: 0 additions & 2 deletions pyrenew/latent/__init__.py
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# -*- coding: utf-8 -*-

# numpydoc ignore=GL08

from pyrenew.latent.hospitaladmissions import HospitalAdmissions
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1 change: 0 additions & 1 deletion pyrenew/latent/hospitaladmissions.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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1 change: 0 additions & 1 deletion pyrenew/latent/infection_functions.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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1 change: 0 additions & 1 deletion pyrenew/latent/infection_initialization_method.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08
from abc import ABCMeta, abstractmethod

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1 change: 0 additions & 1 deletion pyrenew/latent/infection_initialization_process.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08
from pyrenew.latent.infection_initialization_method import (
InfectionInitializationMethod,
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1 change: 0 additions & 1 deletion pyrenew/latent/infections.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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1 change: 0 additions & 1 deletion pyrenew/latent/infectionswithfeedback.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from typing import NamedTuple
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2 changes: 0 additions & 2 deletions pyrenew/math.py
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# -*- coding: utf-8 -*-

"""
Helper functions for doing analytical
and/or numerical calculations about
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2 changes: 0 additions & 2 deletions pyrenew/mcmcutils.py
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# -*- coding: utf-8 -*-

"""
Utilities to deal with MCMC outputs
"""
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2 changes: 0 additions & 2 deletions pyrenew/metaclass.py
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# -*- coding: utf-8 -*-

"""
pyrenew helper classes
"""
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2 changes: 0 additions & 2 deletions pyrenew/model/__init__.py
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# -*- coding: utf-8 -*-

# numpydoc ignore=GL08

from pyrenew.model.admissionsmodel import HospitalAdmissionsModel
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1 change: 0 additions & 1 deletion pyrenew/model/admissionsmodel.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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1 change: 0 additions & 1 deletion pyrenew/model/rtinfectionsrenewalmodel.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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2 changes: 0 additions & 2 deletions pyrenew/observation/__init__.py
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# -*- coding: utf-8 -*-

# numpydoc ignore=GL08

from pyrenew.observation.negativebinomial import NegativeBinomialObservation
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1 change: 0 additions & 1 deletion pyrenew/observation/negativebinomial.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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1 change: 0 additions & 1 deletion pyrenew/observation/poisson.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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2 changes: 0 additions & 2 deletions pyrenew/process/__init__.py
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# -*- coding: utf-8 -*-

# numpydoc ignore=GL08

from pyrenew.process.ar import ARProcess
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1 change: 0 additions & 1 deletion pyrenew/process/ar.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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1 change: 0 additions & 1 deletion pyrenew/process/differencedprocess.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from __future__ import annotations
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1 change: 0 additions & 1 deletion pyrenew/process/iidrandomsequence.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

import numpyro.distributions as dist
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1 change: 0 additions & 1 deletion pyrenew/process/randomwalk.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

import numpyro.distributions as dist
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2 changes: 0 additions & 2 deletions pyrenew/randomvariable/__init__.py
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# -*- coding: utf-8 -*-

# numpydoc ignore=GL08

from pyrenew.randomvariable.distributionalvariable import (
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2 changes: 0 additions & 2 deletions pyrenew/regression.py
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# -*- coding: utf-8 -*-

"""
Helper classes for regression problems
"""
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1 change: 0 additions & 1 deletion test/test_latent_admissions.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from test.utils import SimpleRt
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1 change: 0 additions & 1 deletion test/test_latent_infections.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

from test.utils import SimpleRt
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1 change: 0 additions & 1 deletion test/test_leslie_matrix.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

import jax.numpy as jnp
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1 change: 0 additions & 1 deletion test/test_logistic_susceptibility_adjustment.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

import jax.numpy as jnp
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1 change: 0 additions & 1 deletion test/test_model_basic_renewal.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08


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1 change: 0 additions & 1 deletion test/test_model_hosp_admissions.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08


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1 change: 0 additions & 1 deletion test/test_observation_negativebinom.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

import numpy as np
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1 change: 0 additions & 1 deletion test/test_observation_poisson.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

import jax.numpy as jnp
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2 changes: 0 additions & 2 deletions test/test_predictive.py
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# -*- coding: utf-8 -*-

"""
Ensures that posterior predictive samples are not generated
when no posterior samples are available.
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1 change: 0 additions & 1 deletion test/test_process_asymptotics.py
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# -*- coding: utf-8 -*-
# numpydoc ignore=GL08

import jax.numpy as jnp
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2 changes: 0 additions & 2 deletions test/test_random_key.py
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# -*- coding: utf-8 -*-

"""
Ensures that models created with the same or
with different random keys behave appropriately.
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2 changes: 0 additions & 2 deletions test/test_regression.py
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# -*- coding: utf-8 -*-

"""
Tests for regression functionality
"""
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2 changes: 0 additions & 2 deletions test/test_transformation.py
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# -*- coding: utf-8 -*-

"""
Tests for transformations
"""
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2 changes: 0 additions & 2 deletions test/test_transformed_rv_class.py
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# -*- coding: utf-8 -*-

"""
Tests for TransformedVariable class
"""
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2 changes: 0 additions & 2 deletions test/utils.py
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# -*- coding: utf-8 -*-

"""
test utilities
"""
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