cdscan KeyError: 'height' #421
Comments
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@mzelinka you might want to bump your env up to cdat/label/v8.2.1 just to make sure this issue remains, which it most likely does |
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I just checked and I do not have this issue with CDAT8.2.1. Maybe this fix helped: #397. |
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Upgrading to the latest CDAT via these instructions did not resolve this for me. Same error. |
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Sorry - I was incorrect. I was mistakenly reading the netcdf file not the xml file. This does not work in CDAT8.2 or CDAT8.2.1. |
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@mzelinka - I've hit this bug now, too. I have modified my trimmodellist functionality to skip these files (and print a warning for now)... |
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Describe the bug
I can read in a netcdf file without issue, but when I try to read in data from a cdscan-generated xml that points to that same file, I get KeyError: 'height'.
To Reproduce
Steps to reproduce the behavior (on feedback2.llnl.gov):
I am able to open this netcdf file without any problem:
f=cdms2.open('/p/css03/esgf_publish/CMIP6/CMIP/KIOST/KIOST-ESM/abrupt-4xCO2/r1i1p1f1/Amon/tas/gr1/v20191106/tas_Amon_KIOST-ESM_abrupt-4xCO2_r1i1p1f1_gr1_185001-200012.nc')
Generate an xml pointing to this file via cdscan:
In [69]: import os
In [70]: os.system('cdscan -x temp.xml /p/css03/esgf_publish/CMIP6/CMIP/KIOST/KIOST-ESM/abrupt-4xCO2/r1i1p1f1/Amon/tas/gr1/v20191106/tas_Amon_KIOST-ESM_abrupt-4xCO2_r1i1p1f1_gr1_185001-200012.nc')
Finding common directory ...
Common directory: /p/css03/esgf_publish/CMIP6/CMIP/KIOST/KIOST-ESM/abrupt-4xCO2/r1i1p1f1/Amon/tas/gr1/v20191106/
Scanning files ...
/p/css03/esgf_publish/CMIP6/CMIP/KIOST/KIOST-ESM/abrupt-4xCO2/r1i1p1f1/Amon/tas/gr1/v20191106/tas_Amon_KIOST-ESM_abrupt-4xCO2_r1i1p1f1_gr1_185001-200012.nc
Setting reference time units to days since 1850-01-01
temp.xml written
Out[70]: 0
In [71]: f=cdms2.open('temp.xml')
KeyError Traceback (most recent call last)
in
----> 1 f=cdms2.open('temp.xml')
~/workdir2/miniconda3/envs/cdat82/lib/python3.7/site-packages/cdms2/dataset.py in openDataset(uri, mode, template, dods, dpath, hostObj)
570 dpath = head
571
--> 572 dataset = Dataset(uri, mode, datanode, None, dpath)
573 return dataset
574
~/workdir2/miniconda3/envs/cdat82/lib/python3.7/site-packages/cdms2/dataset.py in init(self, uri, mode, datasetNode, parent, datapath)
762 # Collect named children (having attribute 'id') into dictionaries
763 if datasetNode is not None:
--> 764 coordsaux = self.convention.getDsetnodeAuxAxisIds(datasetNode)
765
766 for node in list(datasetNode.getIdDict().values()):
~/workdir2/miniconda3/envs/cdat82/lib/python3.7/site-packages/cdms2/convention.py in getDsetnodeAuxAxisIds(self, dsetnode)
147 # Check the rank, don't include if not 1D or 2D (e.g.,
148 # scalar coordinate)
--> 149 domnode = dsetdict[item].getDomain()
150 if domnode.getChildCount() not in [1, 2]:
151 continue
KeyError: 'height'
Expected behavior
I expected no problem opening this xml file, just as I experienced no problem opening the netcdf that it points to.
Environment Information
`conda info``conda config --show-sources``conda list --show-channel-urls`The text was updated successfully, but these errors were encountered: