From 68b3047a96dd8a6d165ea50752e924d13eed4c4c Mon Sep 17 00:00:00 2001 From: Michael Lamkin Date: Wed, 27 Apr 2022 19:13:45 -0700 Subject: [PATCH] Delete nohup.out --- nohup.out | 144 ------------------------------------------------------ 1 file changed, 144 deletions(-) delete mode 100644 nohup.out diff --git a/nohup.out b/nohup.out deleted file mode 100644 index e7adee40..00000000 --- a/nohup.out +++ /dev/null @@ -1,144 +0,0 @@ -Traceback (most recent call last): -Traceback (most recent call last): -Traceback (most recent call last): -Traceback (most recent call last): - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 196, in _run_module_as_main - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 196, in _run_module_as_main -Traceback (most recent call last): - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 196, in _run_module_as_main - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 196, in _run_module_as_main - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 196, in _run_module_as_main -Traceback (most recent call last): - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 196, in _run_module_as_main - return _run_code(code, main_globals, None, - return _run_code(code, main_globals, None, - return _run_code(code, main_globals, None, - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 86, in _run_code - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 86, in _run_code - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 86, in _run_code - return _run_code(code, main_globals, None, - return _run_code(code, main_globals, None, - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 86, in _run_code - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 86, in _run_code - exec(code, run_globals) - exec(code, run_globals) - exec(code, run_globals) - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 109, in - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 109, in - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 109, in - exec(code, run_globals) - exec(code, run_globals) - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 109, in - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 109, in - main(prog_name="haptools") - main(prog_name="haptools") - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1128, in __call__ - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1128, in __call__ - main(prog_name="haptools") - main(prog_name="haptools") - main(prog_name="haptools") - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1128, in __call__ - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1128, in __call__ - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1128, in __call__ - return _run_code(code, main_globals, None, - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/runpy.py", line 86, in _run_code - exec(code, run_globals) - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 109, in - main(prog_name="haptools") - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1128, in __call__ - return self.main(*args, **kwargs) - return self.main(*args, **kwargs) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1053, in main - return self.main(*args, **kwargs) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1053, in main - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1053, in main - rv = self.invoke(ctx) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1659, in invoke - rv = self.invoke(ctx) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1659, in invoke - rv = self.invoke(ctx) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1659, in invoke - return _process_result(sub_ctx.command.invoke(sub_ctx)) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1395, in invoke - return _process_result(sub_ctx.command.invoke(sub_ctx)) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1395, in invoke - return _process_result(sub_ctx.command.invoke(sub_ctx)) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1395, in invoke - return self.main(*args, **kwargs) - return self.main(*args, **kwargs) - return self.main(*args, **kwargs) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1053, in main - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1053, in main - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1053, in main - return ctx.invoke(self.callback, **ctx.params) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 754, in invoke - return ctx.invoke(self.callback, **ctx.params) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 754, in invoke - rv = self.invoke(ctx) - rv = self.invoke(ctx) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1659, in invoke - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1659, in invoke - rv = self.invoke(ctx) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1659, in invoke - return __callback(*args, **kwargs) - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 42, in simgenotype - samples, breakpoints = simulate_gt(model, mapdir, chroms, popsize, seed) - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 116, in simulate_gt - return __callback(*args, **kwargs) - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 42, in simgenotype - all_coord_files = [coord_file for coord_file in all_coord_files \ - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 117, in - samples, breakpoints = simulate_gt(model, mapdir, chroms, popsize, seed) - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 116, in simulate_gt - if re.search(r'(?<=chr)(X|\d+)', coord_file).group() in chroms] -TypeError: argument of type 'int' is not iterable - all_coord_files = [coord_file for coord_file in all_coord_files \ - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 117, in - return _process_result(sub_ctx.command.invoke(sub_ctx)) - return _process_result(sub_ctx.command.invoke(sub_ctx)) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1395, in invoke - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1395, in invoke - return _process_result(sub_ctx.command.invoke(sub_ctx)) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 1395, in invoke - if re.search(r'(?<=chr)(X|\d+)', coord_file).group() in chroms] -TypeError: argument of type 'int' is not iterable - return ctx.invoke(self.callback, **ctx.params) - return ctx.invoke(self.callback, **ctx.params) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 754, in invoke - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 754, in invoke - return ctx.invoke(self.callback, **ctx.params) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 754, in invoke - return __callback(*args, **kwargs) - return __callback(*args, **kwargs) - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 42, in simgenotype - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 42, in simgenotype - samples, breakpoints = simulate_gt(model, mapdir, chroms, popsize, seed) - samples, breakpoints = simulate_gt(model, mapdir, chroms, popsize, seed) - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 116, in simulate_gt - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 116, in simulate_gt - return __callback(*args, **kwargs) - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 42, in simgenotype - all_coord_files = [coord_file for coord_file in all_coord_files \ - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 117, in - all_coord_files = [coord_file for coord_file in all_coord_files \ - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 117, in - samples, breakpoints = simulate_gt(model, mapdir, chroms, popsize, seed) - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 116, in simulate_gt - if re.search(r'(?<=chr)(X|\d+)', coord_file).group() in chroms] - if re.search(r'(?<=chr)(X|\d+)', coord_file).group() in chroms] -TypeError: argument of type 'int' is not iterable -TypeError: argument of type 'int' is not iterable - all_coord_files = [coord_file for coord_file in all_coord_files \ - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 117, in - if re.search(r'(?<=chr)(X|\d+)', coord_file).group() in chroms] -TypeError: argument of type 'int' is not iterable - return ctx.invoke(self.callback, **ctx.params) - File "/storage/mlamkin/anaconda3/envs/haptools-dev/lib/python3.10/site-packages/click/core.py", line 754, in invoke - return __callback(*args, **kwargs) - File "/storage/mlamkin/workspace/haptools/haptools/__main__.py", line 42, in simgenotype - samples, breakpoints = simulate_gt(model, mapdir, chroms, popsize, seed) - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 116, in simulate_gt - all_coord_files = [coord_file for coord_file in all_coord_files \ - File "/storage/mlamkin/workspace/haptools/haptools/sim_admixture.py", line 117, in - if re.search(r'(?<=chr)(X|\d+)', coord_file).group() in chroms] -TypeError: argument of type 'int' is not iterable