diff --git a/.cruft.json b/.cruft.json
index ebfb1cb..c8a5f2e 100644
--- a/.cruft.json
+++ b/.cruft.json
@@ -1,6 +1,6 @@
 {
   "template": "https://github.com/scverse/cookiecutter-scverse",
-  "commit": "66a3c30e185cf0deb57a95329b5f3fec7b9f1352",
+  "commit": "4c8f4683073074b201a45b173d91b2a352d4a194",
   "checkout": null,
   "context": {
     "cookiecutter": {
@@ -10,8 +10,9 @@
       "author_full_name": "Gregor Sturm",
       "author_email": "gregor.sturm@boehringer-ingelheim.com",
       "github_user": "sturmgre",
-      "project_repo": "ssh://git@bitbucket.biscrum.com:7999/binfdevops/dso.git",
+      "github_repo": "dso",
       "license": "MIT License",
+      "ide_integration": true,
       "_copy_without_render": [
         ".github/workflows/build.yaml",
         ".github/workflows/test.yaml",
diff --git a/.editorconfig b/.editorconfig
index 050f911..66678e3 100644
--- a/.editorconfig
+++ b/.editorconfig
@@ -8,10 +8,7 @@ charset = utf-8
 trim_trailing_whitespace = true
 insert_final_newline = true
 
-[*.{yml,yaml}]
-indent_size = 2
-
-[.cruft.json]
+[{*.{yml,yaml,toml},.cruft.json}]
 indent_size = 2
 
 [Makefile]
diff --git a/.gitignore b/.gitignore
index eeec7e2..31e10b3 100644
--- a/.gitignore
+++ b/.gitignore
@@ -6,24 +6,15 @@ buck-out/
 # Compiled files
 .venv/
 __pycache__/
-.mypy_cache/
-.ruff_cache/
+.*cache/
 
 # Distribution / packaging
-/build/
 /dist/
-/*.egg-info/
 
 # Tests and coverage
-/.pytest_cache/
-/.cache/
 /data/
 /node_modules/
 
 # docs
 /docs/generated/
 /docs/_build/
-
-# IDEs
-/.idea/
-/.vscode/
diff --git a/.prettierrc.yaml b/.prettierrc.yaml
new file mode 100644
index 0000000..9aaffcb
--- /dev/null
+++ b/.prettierrc.yaml
@@ -0,0 +1,7 @@
+overrides:
+  # JSON with comments and trailing commas
+  - files: .vscode/*.json
+    options:
+      parser: json5
+      quoteProps: preserve
+      singleQuote: false
diff --git a/.vscode/extensions.json b/.vscode/extensions.json
new file mode 100644
index 0000000..a6fa580
--- /dev/null
+++ b/.vscode/extensions.json
@@ -0,0 +1,18 @@
+{
+    "recommendations": [
+        // GitHub integration
+        "github.vscode-github-actions",
+        "github.vscode-pull-request-github",
+        // Language support
+        "ms-python.python",
+        "ms-python.vscode-pylance",
+        "ms-toolsai.jupyter",
+        "tamasfe.even-better-toml",
+        // Dependency management
+        "ninoseki.vscode-mogami",
+        // Linting and formatting
+        "editorconfig.editorconfig",
+        "charliermarsh.ruff",
+        "esbenp.prettier-vscode",
+    ],
+}
diff --git a/.vscode/launch.json b/.vscode/launch.json
new file mode 100644
index 0000000..36d1874
--- /dev/null
+++ b/.vscode/launch.json
@@ -0,0 +1,33 @@
+{
+    // Use IntelliSense to learn about possible attributes.
+    // Hover to view descriptions of existing attributes.
+    // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
+    "version": "0.2.0",
+    "configurations": [
+        {
+            "name": "Python: Build Documentation",
+            "type": "debugpy",
+            "request": "launch",
+            "module": "sphinx",
+            "args": ["-M", "html", ".", "_build"],
+            "cwd": "${workspaceFolder}/docs",
+            "console": "internalConsole",
+            "justMyCode": false,
+        },
+        {
+            "name": "Python: Debug Test",
+            "type": "debugpy",
+            "request": "launch",
+            "program": "${file}",
+            "purpose": ["debug-test"],
+            "console": "internalConsole",
+            "justMyCode": false,
+            "env": {
+                "PYTEST_ADDOPTS": "--color=yes",
+            },
+            "presentation": {
+                "hidden": true,
+            },
+        },
+    ],
+}
diff --git a/.vscode/settings.json b/.vscode/settings.json
new file mode 100644
index 0000000..b6715d6
--- /dev/null
+++ b/.vscode/settings.json
@@ -0,0 +1,18 @@
+{
+    "[python][jsonc][yaml]": {
+        "editor.formatOnSave": true,
+    },
+    "[python]": {
+        "editor.defaultFormatter": "charliermarsh.ruff",
+        "editor.codeActionsOnSave": {
+            "source.fixAll": "always",
+            "source.organizeImports": "always",
+        },
+    },
+    "[jsonc][yaml]": {
+        "editor.defaultFormatter": "esbenp.prettier-vscode",
+    },
+    "python.analysis.typeCheckingMode": "basic",
+    "python.testing.pytestEnabled": true,
+    "python.testing.pytestArgs": ["-vv", "--color=yes"],
+}