diff --git a/R/cnv.R b/R/cnv.R index dbb0e32..6f560d8 100755 --- a/R/cnv.R +++ b/R/cnv.R @@ -41,7 +41,7 @@ new_cnv_output <- function(cnv_file_path, local_app=FALSE) { read_cnv_data <- function(cnv_directory, local_app=FALSE){ cnv_files <- list.files( path = cnv_directory, - pattern = "*CopyNumberVariants.vcf", + pattern = "*cnv.vcf|*CopyNumberVariants.vcf", full.names = TRUE ) cnv_data <- map(cnv_files, cnv, local_app) %>%