# napari-imc [](https://napari-hub.org/plugins/napari-imc) [](https://pypi.org/project/napari-imc) [](https://github.com/BodenmillerGroup/napari-imc/raw/main/LICENSE) [](https://python.org) [](https://github.com/BodenmillerGroup/napari-imc/issues) [](https://github.com/BodenmillerGroup/napari-imc/pulls) Imaging Mass Cytometry (IMC) file type support for napari Load panoramas and multi-channel acquisitions co-registered within the machine's coordinate system from Fluidigm TXT/MCD files ## Installation You can install napari-imc via [pip](https://pypi.org/project/pip/): pip install napari-imc Alternatively, you can install napari-imc via [conda](https://conda.io/): conda install -c conda-forge napari-imc For example, to install napari and napari-imc in a fresh conda environment using pip: conda create -n napari-imc python=3.9 conda activate napari-imc pip install "napari[all]" napari-imc ## Usage Simply open your Fluidigm TXT/MCD file using napari. ## Authors Created and maintained by Jonas Windhager [jonas.windhager@uzh.ch](mailto:jonas.windhager@uzh.ch) ## Citation Please cite the following paper when using napari-imc in your work: > Windhager J, Bodenmiller B, Eling N (2021). An end-to-end workflow for multiplexed image processing and analysis. bioRxiv. doi: https://doi.org/10.1101/2021.11.12.468357. @article{Windhager2021, author = {Windhager, Jonas and Bodenmiller, Bernd and Eling, Nils}, title = {An end-to-end workflow for multiplexed image processing and analysis}, year = {2021}, doi = {10.1101/2021.11.12.468357}, URL = {https://www.biorxiv.org/content/early/2021/11/13/2021.11.12.468357}, journal = {bioRxiv} } ## Contributing [Contributing](https://github.com/BodenmillerGroup/napari-imc/blob/main/CONTRIBUTING.md) ## Changelog [Changelog](https://github.com/BodenmillerGroup/napari-imc/blob/main/CHANGELOG.md) ## License [MIT](https://github.com/BodenmillerGroup/napari-imc/blob/main/LICENSE.md)