From ff95a063f20001f001773fb28aff600aa203a0eb Mon Sep 17 00:00:00 2001 From: Simon Shillaker Date: Wed, 11 Dec 2024 08:38:42 +0100 Subject: [PATCH 1/2] chore(python): update to 3.12 --- .../build_client_sdk_with_poetry.yml | 4 +- ...generate_requirements_for_clever_cloud.yml | 6 +- .github/workflows/release.yml | 4 +- .github/workflows/test.yml | 2 +- Dockerfile | 2 +- Makefile | 4 +- poetry.lock | 179 ++++++++++-------- pyproject.toml | 8 +- 8 files changed, 115 insertions(+), 94 deletions(-) diff --git a/.github/workflows/build_client_sdk_with_poetry.yml b/.github/workflows/build_client_sdk_with_poetry.yml index 4d6d1e5d..28f1c57b 100644 --- a/.github/workflows/build_client_sdk_with_poetry.yml +++ b/.github/workflows/build_client_sdk_with_poetry.yml @@ -29,7 +29,7 @@ jobs: - name: Set up Python uses: actions/setup-python@v5 with: - python-version: '3.9' + python-version: '3.12' - name: Install pipenv run: | @@ -70,7 +70,7 @@ jobs: - name: Build the pip package and push it run: | sudo chown -R $(whoami) boaviztapi_sdk - SDK_VERSION=$(poetry version -s) + SDK_VERSION=$(poetry version -s) echo "SDK_VERSION == ${SDK_VERSION}" cd boaviztapi_sdk sed -i "s/^VERSION.*/VERSION = \"${SDK_VERSION}\"/" setup.py diff --git a/.github/workflows/generate_requirements_for_clever_cloud.yml b/.github/workflows/generate_requirements_for_clever_cloud.yml index 5750387c..ed98ba92 100644 --- a/.github/workflows/generate_requirements_for_clever_cloud.yml +++ b/.github/workflows/generate_requirements_for_clever_cloud.yml @@ -21,7 +21,7 @@ jobs: - name: Set up Python uses: actions/setup-python@v4 with: - python-version: '3.9' # Choose your Python version + python-version: '3.12' # Choose your Python version - name: Install Poetry run: | @@ -33,14 +33,14 @@ jobs: - name: Install dependencies run: poetry install - + - name: Export requirements.txt run: | poetry export --without-hashes --format=requirements.txt > requirements.txt - run: | git config --local user.email "41898282+github-actions[bot]@users.noreply.github.com" - git config --local user.name "github-actions[bot]" + git config --local user.name "github-actions[bot]" - run: git add requirements.txt - run: git commit --m 'generate requirements.txt from poetry' || exit 0 - run: git push diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index 28789f29..1dab22cb 100644 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -26,7 +26,7 @@ jobs: - name: Set up Python uses: actions/setup-python@v5 with: - python-version: '3.9' + python-version: '3.12' - name: Install pipenv run: | @@ -42,7 +42,7 @@ jobs: if: steps.cache-pipenv.outputs.cache-hit != 'true' run: | make install - + - name: Run test suite run: make test diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index e8d2a941..546e0b83 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -26,7 +26,7 @@ jobs: test: strategy: matrix: - version: ["3.9", "3.10", "3.11"] + version: ["3.10", "3.11", "3.12"] runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 diff --git a/Dockerfile b/Dockerfile index 658b3951..6d3253aa 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,4 +1,4 @@ -ARG PY_VERSION=3.9 +ARG PY_VERSION=3.12 FROM python:$PY_VERSION-slim AS build-env ARG VERSION diff --git a/Makefile b/Makefile index 264e4322..272b1147 100644 --- a/Makefile +++ b/Makefile @@ -3,8 +3,8 @@ TIMESTAMP := $(shell date "+%H.%M-%m-%d-%y") DOCKER_NAME := boavizta/boaviztapi:${CURRENT_VERSION} SEMVERS := major minor patch -MINIMUM_PY_VERSION=3.9 -MAXIMUM_PY_VERSION=3.11 +MINIMUM_PY_VERSION=3.10 +MAXIMUM_PY_VERSION=3.12 clean: find . -name "*.pyc" -exec rm -rf {} \; diff --git a/poetry.lock b/poetry.lock index b77d2415..8cff4d58 100644 --- a/poetry.lock +++ b/poetry.lock @@ -449,9 +449,6 @@ files = [ {file = "markdown-3.7.tar.gz", hash = "sha256:2ae2471477cfd02dbbf038d5d9bc226d40def84b4fe2986e49b59b6b472bbed2"}, ] -[package.dependencies] -importlib-metadata = 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+test = ["Cython", "array-api-strict (>=2.0)", "asv", "gmpy2", "hypothesis (>=6.30)", "meson", "mpmath", "ninja", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"] [[package]] name = "six" @@ -1471,7 +1493,6 @@ files = [ [package.dependencies] anyio = ">=3.4.0,<5" -typing-extensions = {version = ">=3.10.0", markers = "python_version < \"3.10\""} [package.extras] full = ["httpx (>=0.22.0)", "itsdangerous", "jinja2", "python-multipart (>=0.0.7)", "pyyaml"] @@ -1679,5 +1700,5 @@ type = ["pytest-mypy"] [metadata] lock-version = "2.0" -python-versions = "^3.9" -content-hash = "d4692946650cbf26459f93f175682d78a74a63c1836b9ad549c1a868c8fcd729" +python-versions = "^3.10" +content-hash = "2fe37d689f8ac53cccb92f5856fac1fb72366a5e09f3275aa44be3b40b5b4932" diff --git a/pyproject.toml b/pyproject.toml index 24297b9d..5c133187 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,14 +6,14 @@ authors = [] readme = "README.md" [tool.poetry.dependencies] -python = "^3.9" +python = "^3.10" pydantic = "^2.9.2" fastapi = "^0.115.0" uvicorn = "^0.22" -pandas = "^2.0" +pandas = "^2.2.3" aiofile = "^3.8" -numpy = "^1.24" -scipy = "^1.9" +numpy = "^2.2.0" +scipy = "^1.14.1" rapidfuzz = "^3.0" markdown = "^3.4" mangum = "^0.17" From a7570aad891183fad34e2d184f0704db39eff33c Mon Sep 17 00:00:00 2001 From: Simon Shillaker Date: Wed, 11 Dec 2024 08:56:57 +0100 Subject: [PATCH 2/2] (docs): small tweaks --- README.md | 30 +++++++++++++++--------------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/README.md b/README.md index e60371f1..38f41cc9 100644 --- a/README.md +++ b/README.md @@ -22,13 +22,13 @@ Boavizta integrates various data and methodologies, which are combined and made Transparency and the popularization of scientific knowledge are of utmost importance in this project, and key aspects include open-sourcing the code, versioning the impact factors, and thoroughly documenting the project. -In the interest of transparency and scientific popularization, the opening of the code, the versioning of the impact factors and the documentation of the project are critical points. +In the interest of transparency and scientific popularization, the opening of the code, the versioning of the impact factors and the documentation of the project are critical points. The system follows a bottom-up approach in its development, organized into layers. The initial layer focuses on equipment. The second layer focues on the impacts of digital services (e.g. cloud instances) or systems. However, assessing the overall global impact of ICT is currently beyond the project's scope. ## :fast_forward: Test it yourself (no installation) -* See our pedagogical front-end app (using the API) : +* See our pedagogical front-end app (using the API): * See the OpenAPI specification: @@ -44,7 +44,7 @@ The system follows a bottom-up approach in its development, organized into layer $ docker run -p 5000:5000 ghcr.io/boavizta/boaviztapi:latest ``` -Access API at http://localhost:5000 +Access the API at http://localhost:5000. ### Install using pip package @@ -52,7 +52,7 @@ Access API at http://localhost:5000 $ pip3 install boaviztapi ``` -Then you can run the server locally with : +Run the server locally with: ```bash $ uvicorn boaviztapi.main:app --host=localhost --port 5000 @@ -62,17 +62,17 @@ $ uvicorn boaviztapi.main:app --host=localhost --port 5000 ### Prerequisite -Python 3 mandatory, python >=3.9 recommended, poetry recommended +Python 3 mandatory, Python >=3.10 and [Poetry](https://python-poetry.org/) strongly recommended. ### Setup poetry -Install poetry. +Install poetry (see the [install instructions](https://python-poetry.org/docs/) for more details): ```bash $ pip3 install poetry ``` -Install dependencies and create a python virtual environment. +Install dependencies and create a Python virtual environment: ```bash $ make install @@ -83,23 +83,23 @@ $ poetry shell **Once in the poetry environment** -Development server uses [uvicorn](https://www.uvicorn.org/) and [fastapi](https://fastapi.tiangolo.com/), you can launch development server with the `uvicorn` CLI. +The development server uses [uvicorn](https://www.uvicorn.org/) and [FastAPI](https://fastapi.tiangolo.com/). You can launch the development server with the `uvicorn` CLI. ```bash $ uvicorn boaviztapi.main:app --host=localhost --port 5000 ``` -You can run the tests with `pytest`. +You can run the tests with `pytest` via `make test`. ### Create your own docker image and run it -Build application package +Build application package: ```sh make install ``` -Build docker image +Build Docker image: ```sh # using the makefile (recommended) @@ -109,7 +109,7 @@ make docker-build docker build --build-arg VERSION=`poetry version -s` . ``` -Run docker image +Run Docker image: ```sh docker run -p 5000:5000/tcp boavizta/boaviztapi:latest @@ -146,7 +146,7 @@ Once API server is launched API swagger is available at [httsp://localhost:5000/ ## :woman: Contributing -See [contributing.md](./CONTRIBUTING.md) +See [contributing.md](./CONTRIBUTING.md). You can build a source distribution (installable with pip) with `make build`. @@ -162,10 +162,10 @@ We use [Semantic Versioning 2.0.0](https://semver.org/) ## :two: Publishing -You can run : +You can run: ```shell -API_TOKEN= make distribute +API_TOKEN= make distribute ``` ## :scroll: License