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DESCRIPTION
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DESCRIPTION
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Package: SparseArray
Title: High-performance sparse data representation and manipulation in R
Description: The SparseArray package provides array-like containers for
efficient in-memory representation of multidimensional sparse data in
R (arrays and matrices). The package defines the SparseArray virtual
class and two concrete subclasses: COO_SparseArray and SVT_SparseArray.
Each subclass uses its own internal representation of the nonzero
multidimensional data: the "COO layout" and the "SVT layout",
respectively. SVT_SparseArray objects mimic as much as possible the
behavior of ordinary matrix and array objects in base R. In particular,
they suppport most of the "standard matrix and array API" defined in
base R and in the matrixStats package from CRAN.
biocViews: Infrastructure, DataRepresentation
URL: https://bioconductor.org/packages/SparseArray
BugReports: https://github.com/Bioconductor/SparseArray/issues
Version: 1.7.2
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
person("Hervé", "Pagès", role=c("aut", "cre"),
email="[email protected]",
comment=c(ORCID="0009-0002-8272-4522")),
person("Vince", "Carey", role="fnd",
email="[email protected]",
comment=c(ORCID="0000-0003-4046-0063")),
person("Rafael A.", "Irizarry", role="fnd",
email="[email protected]",
comment=c(ORCID="0000-0002-3944-4309")),
person("Jacques", "Serizay", role="ctb",
comment=c(ORCID="0000-0002-4295-0624")))
Depends: R (>= 4.3.0), methods, Matrix, BiocGenerics (>= 0.43.1),
MatrixGenerics (>= 1.11.1), S4Vectors (>= 0.43.2), S4Arrays (>= 1.5.11)
Imports: utils, stats, matrixStats, IRanges, XVector
LinkingTo: S4Vectors, IRanges, XVector
Suggests: HDF5Array, ExperimentHub, testthat, knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
Collate: utils.R
options.R
OPBufTree.R
thread-control.R
sparseMatrix-utils.R
is_nonzero.R
SparseArray-class.R
COO_SparseArray-class.R
SVT_SparseArray-class.R
extract_sparse_array.R
read_block_as_sparse.R
SparseArray-dim-tuning.R
SparseArray-aperm.R
SparseArray-subsetting.R
SparseArray-subassignment.R
SparseArray-abind.R
SparseArray-summarization.R
SparseArray-Arith-methods.R
SparseArray-Compare-methods.R
SparseArray-Logic-methods.R
SparseArray-Math-methods.R
SparseArray-Complex-methods.R
SparseArray-misc-methods.R
SparseArray-matrixStats.R
rowsum-methods.R
SparseMatrix-mult.R
randomSparseArray.R
readSparseCSV.R
is_nonna.R
NaArray-class.R
NaArray-aperm.R
NaArray-subsetting.R
NaArray-subassignment.R
NaArray-abind.R
NaArray-summarization.R
NaArray-Arith-methods.R
NaArray-Compare-methods.R
NaArray-Logic-methods.R
NaArray-Math-methods.R
NaArray-misc-methods.R
NaArray-matrixStats.R
zzz.R