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DESCRIPTION
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DESCRIPTION
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Package: DelayedArray
Title: A unified framework for working transparently with on-disk and in-memory array-like datasets
Description: Wrapping an array-like object (typically an on-disk object) in
a DelayedArray object allows one to perform common array operations
on it without loading the object in memory. In order to reduce memory
usage and optimize performance, operations on the object are either
delayed or executed using a block processing mechanism. Note that
this also works on in-memory array-like objects like DataFrame objects
(typically with Rle columns), Matrix objects, ordinary arrays and,
data frames.
biocViews: Infrastructure, DataRepresentation, Annotation, GenomeAnnotation
URL: https://bioconductor.org/packages/DelayedArray
BugReports: https://github.com/Bioconductor/DelayedArray/issues
Version: 0.33.3
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
person("Hervé", "Pagès", role=c("aut", "cre"),
email="[email protected]"),
person("Aaron", "Lun", role="ctb",
email="[email protected]"),
person("Peter", "Hickey", role="ctb",
email="[email protected]"))
Maintainer: Hervé Pagès <[email protected]>
Depends: R (>= 4.0.0), methods, stats4, Matrix,
BiocGenerics (>= 0.53.3), MatrixGenerics (>= 1.1.3),
S4Vectors (>= 0.27.2), IRanges (>= 2.17.3),
S4Arrays (>= 1.5.4), SparseArray (>= 1.5.42)
Imports: stats
LinkingTo: S4Vectors
Suggests: BiocParallel, HDF5Array (>= 1.17.12), genefilter,
SummarizedExperiment, airway, lobstr, DelayedMatrixStats,
knitr, rmarkdown, BiocStyle, RUnit
VignetteBuilder: knitr
Collate: compress_atomic_vector.R
SparseArraySeed-class.R
SparseArraySeed-utils.R
read_sparse_block.R
makeCappedVolumeBox.R
AutoBlock-global-settings.R
AutoGrid.R
blockApply.R
DelayedOp-class.R
DelayedSubset-class.R
DelayedAperm-class.R
DelayedUnaryIsoOpStack-class.R
DelayedUnaryIsoOpWithArgs-class.R
DelayedSubassign-class.R
DelayedSetDimnames-class.R
DelayedNaryIsoOp-class.R
DelayedAbind-class.R
showtree.R
simplify.R
DelayedArray-class.R
DelayedArray-subsetting.R
chunkGrid.R
RealizationSink-class.R
realize.R
DelayedArray-utils.R
DelayedArray-stats.R
matrixStats-methods.R
DelayedMatrix-rowsum.R
DelayedMatrix-mult.R
ConstantArray-class.R
RleArraySeed-class.R
RleArray-class.R
compat.R
zzz.R