diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml
index 3a00509..6d5a8fb 100644
--- a/.github/workflows/publish.yml
+++ b/.github/workflows/publish.yml
@@ -11,11 +11,8 @@ name: Quarto Publish
 jobs:
   build-deploy:
     runs-on: ubuntu-latest
-    container: bioconductor/bioconductor_docker:devel
-
     permissions:
       contents: write
-
     steps:
       - name: Check out repository
         uses: actions/checkout@v4
@@ -32,36 +29,20 @@ jobs:
           cache: 'pip'
       - run: pip install -r requirements.txt
 
-      - name: Set directories
-        run: |
-          echo "R_PKG_DIR=${R_HOME}/site-library" >> $GITHUB_ENV
-
-      - name: Restore the package directory
-        uses: actions/cache@v3
+      - name: Install R
+        uses: r-lib/actions/setup-r@v2
         with:
-          path: ${{ env.R_PKG_DIR }}
-          key: check-packages
-
-      - name: Install dependencies
-        shell: Rscript {0}
-        run: |
-          BiocManager::install(c("knitr", "reticulate", "alabaster", "scRNAseq", "rmarkdown"))
-
-
-      # - name: Install R
-      #   uses: r-lib/actions/setup-r@v2
-      #   with:
-      #     r-version: 'devel'
-      # - uses: r-lib/actions/setup-r-dependencies@v2
-      #   with:
-      #     cache-version: 2
-      #     packages: |
-      #       any::BiocManager
-      #       any::alabaster
-      #       any::scRNAseq
-      #       any::rmarkdown
-            # any::knitr
-            # any::reticulate
+          r-version: 'devel'
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          cache-version: 2
+          packages: |
+            any::BiocManager
+            any::alabaster
+            any::scRNAseq
+            any::rmarkdown
+            any::knitr
+            any::reticulate
       # - run: Rscript r_requirements.r
 
       - name: Render