From e5db39552a5c86a9f3e1f700c7e5c5a1ce38d0cc Mon Sep 17 00:00:00 2001 From: jkanche Date: Wed, 29 May 2024 17:32:43 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20BiocPy/s?= =?UTF-8?q?cRNAseq@44675a93dcd164586f3d8a5fd904746bdf18f878=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .buildinfo | 2 +- _modules/index.html | 8 ++++---- _modules/scrnaseq/fetch_dataset.html | 8 ++++---- _modules/scrnaseq/list_datasets.html | 8 ++++---- _modules/scrnaseq/list_versions.html | 8 ++++---- _modules/scrnaseq/polish_dataset.html | 8 ++++---- _modules/scrnaseq/save_dataset.html | 8 ++++---- _modules/scrnaseq/search_datasets.html | 8 ++++---- _modules/scrnaseq/upload_dataset.html | 8 ++++---- _modules/scrnaseq/utils.html | 11 ++++++----- _static/documentation_options.js | 2 +- api/modules.html | 8 ++++---- api/scrnaseq.html | 8 ++++---- authors.html | 8 ++++---- changelog.html | 8 ++++---- contributing.html | 8 ++++---- genindex.html | 8 ++++---- index.html | 8 ++++---- license.html | 8 ++++---- objects.inv | Bin 536 -> 536 bytes py-modindex.html | 8 ++++---- readme.html | 8 ++++---- search.html | 8 ++++---- 23 files changed, 84 insertions(+), 83 deletions(-) diff --git a/.buildinfo b/.buildinfo index 5021765..aff08b2 100644 --- a/.buildinfo +++ b/.buildinfo @@ -1,4 +1,4 @@ # Sphinx build info version 1 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done. -config: 1077d550f38ca594f743b5d5b00c876c +config: 1b2af96ac9b575a7e69296c62400be38 tags: 645f666f9bcd5a90fca523b33c5a78b7 diff --git a/_modules/index.html b/_modules/index.html index 52f6c8a..19dd01b 100644 --- a/_modules/index.html +++ b/_modules/index.html @@ -5,7 +5,7 @@ - Overview: module code - scrnaseq 0.1.2 documentation + Overview: module code - scrnaseq 0.1.3 documentation @@ -178,7 +178,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -202,7 +202,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation
-
+
diff --git a/_modules/scrnaseq/fetch_dataset.html b/_modules/scrnaseq/fetch_dataset.html index 4afb576..38eaadd 100644 --- a/_modules/scrnaseq/fetch_dataset.html +++ b/_modules/scrnaseq/fetch_dataset.html @@ -5,7 +5,7 @@ - scrnaseq.fetch_dataset - scrnaseq 0.1.2 documentation + scrnaseq.fetch_dataset - scrnaseq 0.1.3 documentation @@ -178,7 +178,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -202,7 +202,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -453,7 +453,7 @@

Source code for scrnaseq.fetch_dataset
-
+
diff --git a/_modules/scrnaseq/list_datasets.html b/_modules/scrnaseq/list_datasets.html index c91d542..760a020 100644 --- a/_modules/scrnaseq/list_datasets.html +++ b/_modules/scrnaseq/list_datasets.html @@ -5,7 +5,7 @@ - scrnaseq.list_datasets - scrnaseq 0.1.2 documentation + scrnaseq.list_datasets - scrnaseq 0.1.3 documentation @@ -178,7 +178,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -202,7 +202,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -485,7 +485,7 @@

Source code for scrnaseq.list_datasets
-
+
diff --git a/_modules/scrnaseq/list_versions.html b/_modules/scrnaseq/list_versions.html index a8819b8..0fa4aa0 100644 --- a/_modules/scrnaseq/list_versions.html +++ b/_modules/scrnaseq/list_versions.html @@ -5,7 +5,7 @@ - scrnaseq.list_versions - scrnaseq 0.1.2 documentation + scrnaseq.list_versions - scrnaseq 0.1.3 documentation @@ -178,7 +178,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -202,7 +202,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -338,7 +338,7 @@

Source code for scrnaseq.list_versions
-
+
diff --git a/_modules/scrnaseq/polish_dataset.html b/_modules/scrnaseq/polish_dataset.html index bb8bd8e..1842ca9 100644 --- a/_modules/scrnaseq/polish_dataset.html +++ b/_modules/scrnaseq/polish_dataset.html @@ -5,7 +5,7 @@ - scrnaseq.polish_dataset - scrnaseq 0.1.2 documentation + scrnaseq.polish_dataset - scrnaseq 0.1.3 documentation @@ -178,7 +178,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -202,7 +202,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -419,7 +419,7 @@

Source code for scrnaseq.polish_dataset
-
+
diff --git a/_modules/scrnaseq/save_dataset.html b/_modules/scrnaseq/save_dataset.html index 741b583..3a0c163 100644 --- a/_modules/scrnaseq/save_dataset.html +++ b/_modules/scrnaseq/save_dataset.html @@ -5,7 +5,7 @@ - scrnaseq.save_dataset - scrnaseq 0.1.2 documentation + scrnaseq.save_dataset - scrnaseq 0.1.3 documentation @@ -178,7 +178,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -202,7 +202,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -439,7 +439,7 @@

Source code for scrnaseq.save_dataset
-
+
diff --git a/_modules/scrnaseq/search_datasets.html b/_modules/scrnaseq/search_datasets.html index 99e46ea..b06b8f8 100644 --- a/_modules/scrnaseq/search_datasets.html +++ b/_modules/scrnaseq/search_datasets.html @@ -5,7 +5,7 @@ - scrnaseq.search_datasets - scrnaseq 0.1.2 documentation + scrnaseq.search_datasets - scrnaseq 0.1.3 documentation @@ -178,7 +178,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -202,7 +202,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -403,7 +403,7 @@

Source code for scrnaseq.search_datasets
-
+
diff --git a/_modules/scrnaseq/upload_dataset.html b/_modules/scrnaseq/upload_dataset.html index 030a755..68e4bf8 100644 --- a/_modules/scrnaseq/upload_dataset.html +++ b/_modules/scrnaseq/upload_dataset.html @@ -5,7 +5,7 @@ - scrnaseq.upload_dataset - scrnaseq 0.1.2 documentation + scrnaseq.upload_dataset - scrnaseq 0.1.3 documentation @@ -178,7 +178,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -202,7 +202,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -378,7 +378,7 @@

Source code for scrnaseq.upload_dataset
-
+
diff --git a/_modules/scrnaseq/utils.html b/_modules/scrnaseq/utils.html index c9bc455..24dc66f 100644 --- a/_modules/scrnaseq/utils.html +++ b/_modules/scrnaseq/utils.html @@ -5,7 +5,7 @@ - scrnaseq.utils - scrnaseq 0.1.2 documentation + scrnaseq.utils - scrnaseq 0.1.3 documentation @@ -178,7 +178,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -202,7 +202,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -379,7 +379,7 @@

Source code for scrnaseq.utils

             "rows": x.shape[0],
             "columns": x.shape[1],
             "assays": list(x.get_assay_names()),
-            "column_annotations": list(x.get_column_names()),
+            "column_annotations": list(x.get_column_data().get_column_names()),
         }
 
         if isinstance(x, SingleCellExperiment):
@@ -387,6 +387,7 @@ 
Source code for scrnaseq.utils
                 "reduced_dimensions": list(x.get_reduced_dim_names()),
                 "alternative_experiments": list(x.get_alternative_experiment_names()),
             }
+
     elif isinstance(x, BiocFrame):
         _meta["data_frame"] = {
             "rows": len(x),
@@ -427,7 +428,7 @@ 
Source code for scrnaseq.utils
       
     
   

-

+
diff --git a/_static/documentation_options.js b/_static/documentation_options.js index d2ff549..2f0ebda 100644 --- a/_static/documentation_options.js +++ b/_static/documentation_options.js @@ -1,5 +1,5 @@ const DOCUMENTATION_OPTIONS = { - VERSION: '0.1.2', + VERSION: '0.1.3', LANGUAGE: 'en', COLLAPSE_INDEX: false, BUILDER: 'html', diff --git a/api/modules.html b/api/modules.html index fa5393b..0eeae28 100644 --- a/api/modules.html +++ b/api/modules.html @@ -6,7 +6,7 @@ - scrnaseq - scrnaseq 0.1.2 documentation + scrnaseq - scrnaseq 0.1.3 documentation @@ -179,7 +179,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -203,7 +203,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -362,7 +362,7 @@

scrnaseq

-
+
diff --git a/api/scrnaseq.html b/api/scrnaseq.html index 148b493..536642a 100644 --- a/api/scrnaseq.html +++ b/api/scrnaseq.html @@ -6,7 +6,7 @@ - scrnaseq package - scrnaseq 0.1.2 documentation + scrnaseq package - scrnaseq 0.1.3 documentation @@ -179,7 +179,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -203,7 +203,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -825,7 +825,7 @@

Submodules +

diff --git a/authors.html b/authors.html index 7e7b36d..c9a74fd 100644 --- a/authors.html +++ b/authors.html @@ -6,7 +6,7 @@ - Contributors - scrnaseq 0.1.2 documentation + Contributors - scrnaseq 0.1.3 documentation @@ -179,7 +179,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -203,7 +203,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -317,7 +317,7 @@

Contributors +

diff --git a/changelog.html b/changelog.html index 56f631a..b672fc5 100644 --- a/changelog.html +++ b/changelog.html @@ -6,7 +6,7 @@ - Changelog - scrnaseq 0.1.2 documentation + Changelog - scrnaseq 0.1.3 documentation @@ -179,7 +179,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -203,7 +203,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -333,7 +333,7 @@

Version 0.1 (development) +

diff --git a/contributing.html b/contributing.html index 87814e4..b31287c 100644 --- a/contributing.html +++ b/contributing.html @@ -6,7 +6,7 @@ - Contributing - scrnaseq 0.1.2 documentation + Contributing - scrnaseq 0.1.3 documentation @@ -179,7 +179,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -203,7 +203,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -582,7 +582,7 @@

Releases

-
+
diff --git a/genindex.html b/genindex.html index fb1ff7f..6708506 100644 --- a/genindex.html +++ b/genindex.html @@ -4,7 +4,7 @@ - Index - scrnaseq 0.1.2 documentation + Index - scrnaseq 0.1.3 documentation @@ -177,7 +177,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -201,7 +201,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -468,7 +468,7 @@

U

-
+
diff --git a/index.html b/index.html index 15db434..1567969 100644 --- a/index.html +++ b/index.html @@ -6,7 +6,7 @@ - scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -179,7 +179,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -203,7 +203,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -367,7 +367,7 @@

Indices and tables +

diff --git a/license.html b/license.html index 2f5be88..a9337c3 100644 --- a/license.html +++ b/license.html @@ -6,7 +6,7 @@ - License - scrnaseq 0.1.2 documentation + License - scrnaseq 0.1.3 documentation @@ -179,7 +179,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -203,7 +203,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -337,7 +337,7 @@

License

-
+
diff --git a/objects.inv b/objects.inv index f03dad8a9a61eb18a30c367346e52015d698f0c5..b489b4a4276bd0903ae90368070b368f10989a7d 100644 GIT binary patch delta 12 TcmbQiGJ|D;1EcXq$Lov$8RrBC delta 12 TcmbQiGJ|D;1EbMK$Lov$8R7&6 diff --git a/py-modindex.html b/py-modindex.html index b3e73f9..e84cd95 100644 --- a/py-modindex.html +++ b/py-modindex.html @@ -4,7 +4,7 @@ - Python Module Index - scrnaseq 0.1.2 documentation + Python Module Index - scrnaseq 0.1.3 documentation @@ -177,7 +177,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -201,7 +201,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -353,7 +353,7 @@

Python Module Index

-
+
diff --git a/readme.html b/readme.html index c514056..f3aa387 100644 --- a/readme.html +++ b/readme.html @@ -6,7 +6,7 @@ - scrnaseq - scrnaseq 0.1.2 documentation + scrnaseq - scrnaseq 0.1.3 documentation @@ -179,7 +179,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -203,7 +203,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -559,7 +559,7 @@

Note

-
+
diff --git a/search.html b/search.html index c32784f..6b28236 100644 --- a/search.html +++ b/search.html @@ -7,7 +7,7 @@ -Search - scrnaseq 0.1.2 documentation +Search - scrnaseq 0.1.3 documentation @@ -179,7 +179,7 @@
-
scrnaseq 0.1.2 documentation
 +
scrnaseq 0.1.3 documentation
@@ -203,7 +203,7 @@
- scrnaseq 0.1.2 documentation + scrnaseq 0.1.3 documentation @@ -298,7 +298,7 @@
-
+