From 3ed801859ea36d5dad07f426baa709f53e4f0a82 Mon Sep 17 00:00:00 2001
From: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Date: Fri, 10 Nov 2023 10:56:22 -0800
Subject: [PATCH] Fix issues with SE/SCE migration (#20).

Fix package versions, atleast until all packages are updated
---
 setup.cfg               |  8 ++++++--
 src/rds2py/interface.py | 10 +++++-----
 2 files changed, 11 insertions(+), 7 deletions(-)

diff --git a/setup.cfg b/setup.cfg
index b600ef9..80d5076 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -41,7 +41,7 @@ package_dir =
     =src
 
 # Require a min/specific Python version (comma-separated conditions)
-# python_requires = >=3.8
+python_requires = >=3.8
 
 # Add here dependencies of your project (line-separated), e.g. requests>=2.2,<3.0.
 # Version specifiers like >=2.2,<3.0 avoid problems due to API changes in
@@ -53,7 +53,11 @@ install_requires =
     numpy
     pandas
     scipy
-    biocpy
+    biocframe==0.3.20
+    singlecellexperiment==0.3.3
+    summarizedexperiment==0.3.7
+    anndata
+    mudata
 
 [options.packages.find]
 where = src
diff --git a/src/rds2py/interface.py b/src/rds2py/interface.py
index 062674c..580b377 100644
--- a/src/rds2py/interface.py
+++ b/src/rds2py/interface.py
@@ -243,15 +243,15 @@ def as_summarized_experiment(
 
     if _cls == "SummarizedExperiment":
         return SummarizedExperiment(
-            assays=robj_asys, rowData=robj_rowdata, colData=robj_coldata
+            assays=robj_asys, row_data=robj_rowdata, col_data=robj_coldata
         )
     elif _cls == "SingleCellExperiment":
         return SingleCellExperiment(
             assays=robj_asys,
-            rowData=robj_rowdata,
-            colData=robj_coldata,
-            alterExps=robj_altExps,
-            reducedDims=robj_reduced_dims,
+            row_data=robj_rowdata,
+            col_data=robj_coldata,
+            alternative_experiments=robj_altExps,
+            reduced_dims=robj_reduced_dims,
         )
     else:
         raise TypeError(