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CHANGELOG.md

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Changelog

Version 0.6.0

  • chore: Remove Python 3.8 (EOL)
  • precommit: Replace docformatter with ruff's formatter

Version 0.5.11

  • Methods to flatten a nested BiocFrame object.
  • Interop with Polars; added methods to coerce BiocFrame object to a polars DataFrame and vice-versa
  • Corce methods especially the integrations with pandas and polars, first flatten the BiocFrame before attempting the coersion.

Version 0.5.1

  • Moved the pandas converter into a BiocFrame class method for more accessibility.
  • Attach row names to the output of get_column_data() by default. This can be turned off with the with_names = False option.

Version 0.5.0

  • Bugfixes to avoid pass-by-reference effects when setting or removing columns.
  • Provide functional-style method to add/remove multiple columns at once.
  • Allow setting/removal of columns by position index instead of name.
  • Provide a relaxed_combine_rows and merge function for flexible combining.
  • Reduce the variety of arguments for __getitem__, to simplify user expectations.
  • Internal refactoring to use generics from the BiocUtils package.

Version 0.3

This release migrates the package to a more palatable Google's Python style guide. A major modification to the package is with casing, all camelCase methods, functions and parameters are now snake_case.

In addition, docstrings and documentation has been updated to use sphinx's features of linking objects to their types. Sphinx now also documents private and special dunder methods (e.g. __getitem__, __copy__ etc). Intersphinx has been updated to link to references from dependent packages.

configuration for flake8, ruff and black has been added to pyproject.toml and setup.cfg to be less annoying.

In addition, pyscaffold has been updated to use "myst-parser" as the markdown compiler instead of recommonmark. As part of the pyscaffold setup, one may use pre-commits to run some of the routine tasks of linting and formatting before every commit. While this is sometimes annoying and can be ignored with --no-verify, it brings some consistency to the code base.

Version 0.2

  • refactor DataFrame as BiocFrame
  • implementing slicing methods, tests

Version 0.1

  • Initial creation of DataFrame class
  • Tests
  • Documentation
  • GitHub actions