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Zheng_PNAS2012: measurements matches simulation #181

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dilpath opened this issue Feb 22, 2023 · 1 comment
Open

Zheng_PNAS2012: measurements matches simulation #181

dilpath opened this issue Feb 22, 2023 · 1 comment

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@dilpath
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dilpath commented Feb 22, 2023

Reported by @plakrisenko

The measurements and simulation are almost identical.

Comparing the data [1] and simulation [2] from the original benchmark collection.

  • [1] seems to correspond with the data and simulated data in our PEtab problem
  • [1] contains the same standard deviation values everywhere... probably the estimated sigma in our PEtab problem
  • [2] contains negative values...

[1] https://github.com/Benchmarking-Initiative/Benchmark-Models/blob/master/Benchmark-Models/Zheng_PNAS2012/Data/model1_data1.xlsx
[2] https://github.com/Benchmarking-Initiative/Benchmark-Models/blob/master/Benchmark-Models/Zheng_PNAS2012/SimulatedData/model1_data1.xlsx

@plakrisenko
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Zheng_PNAS2012_simulated_w_nominal_values.csv
Also, [2] is different from what I get when simulating with nominal values from parameter table

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