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This is an interesting issue. We depend on tifffile, and specifically its zarr interface. Since we don't want to depend on tifffile[all] because we don't need matplotlib and other optional dependencies of tifffile, we opted for:
Basically manually adding the dependencies we need.
But this can lead to installations in which pip would resolve a working environment, that might have two incompatible versions of imagecodecs and tifffile installed. Here are the compatible versions:
tifffile
imagecodecs
>=2023.8.12
>=2023.8.12
>=2023.1.23
>=2023.1.23
>=2022.7.28
>=2022.2.22
>=2022.2.22
>=2021.11.20
>=2021.7.30
>=2021.7.30
>=2021.6.6
>=2021.4.28
I think two incompatible versions of imagecodecs and tifffile might be the cause of imi-bigpicture/wsidicomizer#87 and zarr might catch whatever error and just return black tiles. But I first need to investigate if my guess is actually correct...
The text was updated successfully, but these errors were encountered:
This is an interesting issue. We depend on tifffile, and specifically its zarr interface. Since we don't want to depend on
tifffile[all]
because we don't need matplotlib and other optional dependencies oftifffile
, we opted for:tiffslide/setup.cfg
Lines 36 to 42 in 8bea5a4
Basically manually adding the dependencies we need.
But this can lead to installations in which pip would resolve a working environment, that might have two incompatible versions of
imagecodecs
andtifffile
installed. Here are the compatible versions:I think two incompatible versions of
imagecodecs
andtifffile
might be the cause of imi-bigpicture/wsidicomizer#87 andzarr
might catch whatever error and just return black tiles. But I first need to investigate if my guess is actually correct...The text was updated successfully, but these errors were encountered: