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bug with names of differential_analysis #167

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alexg9010 opened this issue Apr 30, 2021 · 0 comments
Open

bug with names of differential_analysis #167

alexg9010 opened this issue Apr 30, 2021 · 0 comments

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@alexg9010
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alexg9010 commented Apr 30, 2021

Error occured, If names for the differential analysis is

"CCRepro_vs_CCNormal:" and "CCRepro_vs_CCNormal_NFR:"

InputFunctionException in line 185 of /gnu/store/0fjyszb91qqki545krh0j3244932c1c7-pigx-chipseq-0.0.51/libexec/pigx_chipseq/Rules/Mapping.py:
KeyError: '_NFR_BT_IO_02_bat2088_D1_CCRepro_I'
Wildcards:
genome_type=Main
name=_NFR_BT_IO_02_bat2088_D1_CCRepro_I

The reason is probably the similarity of the two names, since keeping only one analysis is fine.
One fix is to omit the last underscore to change the CCNormal_NFR to CCNormalNFR, which renders it another word that can be filled by the snakemake interpolation.

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