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nucleotide fasta to Masterfile #49

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ivaneskos opened this issue Oct 14, 2022 · 3 comments
Open

nucleotide fasta to Masterfile #49

ivaneskos opened this issue Oct 14, 2022 · 3 comments

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@ivaneskos
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ivaneskos commented Oct 14, 2022

Hi,@natacha-beck !
I am trying to run MFannot locally, from docker-container. Am I right, that the only input format is the Masterfile? How can I get a Masterfile from nucleotide fasta?

I am running
sudo docker run nbeck/mfannot mfannot --genetic 4 --outputfile my.out --logfile my.log --T (pwd)/tmp my.fasta

and I have an error
No masterfile found

@kikinocka
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Hi,
I am having the same issue. Could you please specify how the master file should look? Single or multi-fasta nucleotide file doesn't work.

Thank you!
Kristina

@Adamtaranto
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Adamtaranto commented Jan 5, 2024

I'm also running into this issue.

@natacha-beck or @bflang could you add a conversion tool to the docker image?

@TCHeaven
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+1

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