diff --git a/docs/beast_graphical_model.rst b/docs/beast_graphical_model.rst index 7a72176f9..dbc71b58f 100644 --- a/docs/beast_graphical_model.rst +++ b/docs/beast_graphical_model.rst @@ -1,3 +1,4 @@ +.. _beast_graphical_model: ############### Graphical Model @@ -22,3 +23,28 @@ Based on equations in Gordon et al. (2016). .. image:: images/beast-graphic-math.png Generated with the `beast plot_graphic_model --type=math --savefig=png`. + + +############################### +Graphical Model of Output Files +############################### + +This visualizes how BEAST runs create files when using either (a) subgrids or +(b) source density (SD) splitting. To visualize the use of both, replace each +SED subgrid branch with an instance of the SD file tree. + + +Subgrids +======== + +.. image:: images/beast-graphic-file-flow-subgrid.png + +Generated with `beast plot_graphic_file_flow --plot_type=subgrid --savefig=png`. + + +Source Density +============== + +.. image:: images/beast-graphic-file-flow-sd.png + +Generated with `beast plot_graphic_file_flow --plot_type=sd --savefig=png`. diff --git a/docs/images/beast-file-flow-sourceden.png b/docs/images/beast-file-flow-sourceden.png new file mode 100644 index 000000000..92908c38c Binary files /dev/null and b/docs/images/beast-file-flow-sourceden.png differ diff --git a/docs/images/beast-file-flow-subgrid.png b/docs/images/beast-file-flow-subgrid.png new file mode 100644 index 000000000..dd015ecf7 Binary files /dev/null and b/docs/images/beast-file-flow-subgrid.png differ diff --git a/docs/workflow.rst b/docs/workflow.rst index 84ab84b0f..5dd59e737 100644 --- a/docs/workflow.rst +++ b/docs/workflow.rst @@ -11,6 +11,8 @@ for the refitting, fixing issues, etc without rerunning everything. This workflow has been tested on large (e.g., PHAT) and small (e.g. METAL) datasets. +For visualizations of the code and files, see :ref:`BEAST Graphical Models +`. ***** Setup